Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq22520 113 2e-22 seq92133 104 8e-20 seq250949 95.1 4e-17 seq125239 87.8 6e-15 seq128916 82.4 3e-13 >seq22520 Length=574 Score = 113 bits (124), Expect = 2e-22 Identities = 181/254 (71%), Gaps = 6/254 (2%) Strand=Plus/Plus Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365 |||||| ||||| | |||| | | | ||||||| || | ||||| | |||||| Sbjct 313 AGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTA 372 Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425 ||||||| ||||||| ||| ||| | | || || || | ||| ||||||| ||| Sbjct 373 AGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTAGGGGTGCAGAGACAGCCTGGAG 430 Query 426 GTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTC 485 ||| || | |||||||||| | || || |||||||||| |||||||| ||||| || Sbjct 431 GTTTGCCTAGAAGCAGCCA-CCCTTGAATGAGTGCGTAATAGCTCACTGATCGAGTGCTC 489 Query 486 GGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGAT-CATTTATATG 544 ||| || || | |||| ||||| ||| ||||||| ||||||| | ||| Sbjct 490 TTGCGCCGAAGATGAACGGG-GTTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATA-C 547 Query 545 ATCGGTAGGGGAGC 558 |||||||||||||| Sbjct 548 ATCGGTAGGGGAGC 561 >seq92133 Length=5482 Score = 104 bits (114), Expect = 8e-20 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 49 TGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTA 108 ||||||| ||||| ||||||||||| | ||| | || |||||||||||||| ||| Sbjct 4167 TGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTG 4108 Query 109 ATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAA 168 |||||||| ||| || ||||||| ||||| ||||||||||| || | | ||| || | Sbjct 4107 ATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGA 4048 Query 169 TAGCT 173 ||||| Sbjct 4047 TAGCT 4043 >seq250949 Length=10164 Score = 95.1 bits (104), Expect = 4e-17 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | || ||| | | |||||||| | |||||||| ||||| Sbjct 2155 CGAGTCTTCATAGGGCAATCGTAACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 2096 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 |||| ||||| | ||| | || ||||||||||||| ||| |||||||| ||| Sbjct 2095 ACCAG--TGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACTGACTGATGTTGAAGAATC 2038 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 || ||||||| ||||| ||||||||||| || Sbjct 2037 AGCGGATGAGTTGTGGTTAGGGGTGAAATGC 2007 >seq125239 Length=5763 Score = 87.8 bits (96), Expect = 6e-15 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 65 AGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGG 124 ||||||||| | ||| | || |||||||||||| | ||| |||||||| ||| || Sbjct 481 AGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAATCGACTGATGTTGAAGAATCAGC 422 Query 125 GGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTT 177 ||||||| ||||| ||||||||||| || | | |||| || ||||||||| Sbjct 421 GGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACTCAGAGCTAGCTGGTT 369 >seq128916 Length=10749 Score = 82.4 bits (90), Expect = 3e-13 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 80 TAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGT 139 ||||| ||| |||||| |||||||||| |||| | ||||| |||||||| ||||| | Sbjct 9274 TAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCT 9333 Query 140 AGGGGTGAAAGGCTAAACAA 159 ||||||||||||| || ||| Sbjct 9334 AGGGGTGAAAGGCCAACCAA 9353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1681761844224