Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq52643 600 4e-169 seq226644 143 9e-32 seq151026 140 1e-30 seq448441 138 4e-30 seq231878 105 2e-20 seq182049 105 2e-20 seq261267 93.3 1e-16 seq136330 91.5 5e-16 seq231951 87.8 6e-15 >seq52643 Length=978 Score = 600 bits (664), Expect = 4e-169 Identities = 430/491 (88%), Gaps = 7/491 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 491 CTTCTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 550 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 551 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 610 Query 127 GGCCCGCGAAGGA---CCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTCA 182 ||||||| ||| |||| ||| ||| || || | || | ||||| |||| Sbjct 611 GGCCCGCCGAGGCGAGCCTTGGGTCCAAAAAGAGG--GGCATTGCCCCGCTTCCGATTCA 668 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242 || ||||||||| ||| | | |||||||||||||||| |||| || |||||||| Sbjct 669 CGGAATAAGTAAAATAACCGTTAAAATAGTGGTATTTCACTTTCGCCCGAA-GGCTCCCA 727 Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 728 CTTATACTACACCACTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 787 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 788 CTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTA 847 Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 848 GACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTACATGACGAGG 907 Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482 |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 908 CATTTGAATACCTTAAGAGATTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 967 Query 483 TTCTTCACTTT 493 ||||||||||| Sbjct 968 TTCTTCACTTT 978 >seq226644 Length=553 Score = 143 bits (158), Expect = 9e-32 Identities = 149/191 (78%), Gaps = 7/191 (4%) Strand=Plus/Minus Query 61 GTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACC 120 ||||| ||||||||||||||||||||||||||||||||||||| |||||||| || || Sbjct 190 GTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTAACAATGTCTTCCGCC 131 Query 121 CGGATCGGCCCGCGAAGG---ACCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCC 176 ||||| ||||||| ||| ||||| | | ||| | || | || ||| |||| Sbjct 130 CGGATTGGCCCGCCGAGGCGAACCTTGGGTCAAAAAAGAGGGGCATTG--CCCCACTTCC 73 Query 177 GCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG 236 | |||| | ||||||||| || | ||| ||||||||||||||||| |||| || || Sbjct 72 GATTCACGAAATAAGTAAAATAATGTTAAAAGTAGTGGTATTTCACTTTCGCCCGAA-GG 14 Query 237 CTCCCACTTAT 247 ||||||||||| Sbjct 13 CTCCCACTTAT 3 >seq151026 Length=594 Score = 140 bits (154), Expect = 1e-30 Identities = 107/127 (84%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || | | ||||||||||||||| |||| | || ||||| |||||||||| Sbjct 449 CTTCTGTTCCATACGAGATTTCTGTTCTCGTTGAGCTCATCTCAGGACCCCTGCGTTATC 508 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||| ||||||||||||| |||||||||||||||||||||||| || |||||||| Sbjct 509 TTTTAACATATGTGCCGCCCCATCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 568 Query 127 GGCCCGC 133 ||||||| Sbjct 569 GGCCCGC 575 >seq448441 Length=836 Score = 138 bits (152), Expect = 4e-30 Identities = 84/89 (94%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 419 TGACGAGGCATTTGACTACCTTAAGAGAGTCATAGTTACTCCCGTCGTTTACCCATACTT 360 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGA 503 ||||||||||||||||||||||||||||| Sbjct 359 GGTTGAATTTCTTCACTTTGACATTCAGA 331 >seq231878 Length=878 Score = 105 bits (116), Expect = 2e-20 Identities = 61/63 (97%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 47 CTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGA 106 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 703 CTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGA 644 Query 107 CAA 109 ||| Sbjct 643 CAA 641 >seq182049 Length=4987 Score = 105 bits (116), Expect = 2e-20 Identities = 113/147 (77%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 301 GTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAG 360 ||||||| |||| |||||| | ||| ||| ||| |||| |||| |||| ||||| Sbjct 2543 GTCTTCTCTCCCGACTGATTT-GACAACCCCATTCAGTTGGTTGTGATTTCATCTGATAG 2601 Query 361 TAGATAGGGACAGTGGGAATCTCGTTAATCCATT-CATGCGCGTCACTAATTAGATGACG 419 ||| | ||||| || |||||| | || ||||| ||| | | ||| |||| |||||||| Sbjct 2602 CAGACAAGGACAATGACAATCTCATCAAACCATTTCATACACATCATTAATCAGATGACG 2661 Query 420 AGGCATTTGGCTACCTTAAGAGAGTCA 446 ||||||||||||| ||||||| || || Sbjct 2662 AGGCATTTGGCTATCTTAAGACAGGCA 2688 >seq261267 Length=5937 Score = 93.3 bits (102), Expect = 1e-16 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 275 GTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTT 334 ||||||||||||||||||||||| ||||||||||| | || || ||| |||||| |||| Sbjct 946 GTCGGACTAGAGTCAAGCTCAACTGGGTCTTCTTTTCTCGTTGTTTCTGCCAAGTTCGTT 887 Query 335 CCCTTGGCTGTGGTTTCGCTA 355 |||| || ||||||||||| Sbjct 886 GCCTTAACTTTGGTTTCGCTA 866 >seq136330 Length=639 Score = 91.5 bits (100), Expect = 5e-16 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 308 TTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG 367 |||||||||||||| ||||||||| |||||||||||| ||||||||| |||| |||| | Sbjct 572 TTCCCCGCTGATTCTGCCAAGCCCATTCCCTTGGCTGGGGTTTCGCTGGATATTAGACAA 631 Query 368 GGACAGTG 375 |||||||| Sbjct 632 GGACAGTG 639 >seq231951 Length=7531 Score = 87.8 bits (96), Expect = 6e-15 Identities = 75/92 (82%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 22 AGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGA--TGT 79 |||||| |||||| |||| | |||| ||| |||| ||||| ||||||||| ||| Sbjct 1723 AGATTTACGTTCTCGTTGAGCTCATCTTAAGACGCCTGAGTTATCTTTTAACAGAGATGT 1782 Query 80 GCCGCCCCAGCCAAACTCCCCACCTGACAATG 111 || ||| ||||||||||||||||||||||||| Sbjct 1783 GCTGCCTCAGCCAAACTCCCCACCTGACAATG 1814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1627614209088