Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq102272 116 8e-24 seq273576 114 3e-23 seq335433 109 1e-21 seq233014 87.8 4e-15 seq16558 87.8 4e-15 seq26943 86.0 1e-14 seq212149 84.2 5e-14 seq195394 80.6 6e-13 seq273862 78.8 2e-12 seq335676 77.0 7e-12 seq145819 77.0 7e-12 >seq102272 Length=6284 Score = 116 bits (128), Expect = 8e-24 Identities = 146/199 (73%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | | || | ||||| ||| ||||| || | ||| |||| || Sbjct 588 AAAAGAAGTTCACGACCAGTGGG-CCTTCTACCTCCACGCGACATTGCTCCGTCAGGCTT 646 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||||||||||||||||| ||| |||||||| || Sbjct 647 TCGCCCATTGCGAAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTTAG 706 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||||||| || | ||| || | | || ||| || || Sbjct 707 TCCCAGTGTGGCCGAACATCCTCTCGGACCAGCTACTAATTATCGCCTTGGTATGCTATT 766 Query 261 ACCCCGCCTACTACCTAAT 279 ||| | || |||| ||||| Sbjct 767 ACCTCACCAACTAGCTAAT 785 >seq273576 Length=5696 Score = 114 bits (126), Expect = 3e-23 Identities = 115/148 (78%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | ||||| ||| ||||| | | | | |||| || Sbjct 5161 AAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGCGGCATTGATCTGTCAGGCTT 5103 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 |||||||||| || ||||| |||||||||||||||| ||||||||| |||||||||| Sbjct 5102 TCGTCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTTGGAGTTTGGGTCGTGTCTCAG 5043 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGA 228 | ||| ||||| || | |||||||||| Sbjct 5042 TCCCAGTGTGGCTGATCATCCTCTCAGA 5015 >seq335433 Length=212 Score = 109 bits (120), Expect = 1e-21 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 116 CACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCC 175 ||||| | | ||||| || | || ||| |||||| |||| ||||| |||||||||| || Sbjct 212 CACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCC 153 Query 176 CGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTA 235 || |||||| || |||||||||||| ||| ||||| || | ||| ||| | ||| Sbjct 152 CGCAGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGTTGATCATCCGAAAAGACCAGCTA 93 Query 236 TCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 |||| | |||| ||| ||| ||||| || |||||||||| ||||| | |||| Sbjct 92 AGCATCATTGGCTTGGTCAGCCTTTACCAGACCAACTACCTAATACTACGCAGGCTCATC 33 Query 296 GTACACCG 303 ||| || Sbjct 32 AAACAGCG 25 >seq233014 Length=24435 Score = 87.8 bits (96), Expect = 4e-15 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 ||| ||| |||||||||| || ||||||||||||||||||| ||||||||||||||| Sbjct 12777 TCACACTTTCGTCCATTGCGGAAAATTCCTCACTGCTGCCTCCTGTAGGAGTTTGGACCA 12718 Query 193 TGTCTCAGTTCCAATGTG 210 ||||||| | | | |||| Sbjct 12717 TGTCTCAATCCTAGTGTG 12700 >seq16558 Length=7468 Score = 87.8 bits (96), Expect = 4e-15 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | ||||| ||| |||| | | ||| |||| || Sbjct 908 AAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCAACGCGGCATTGCTCCGTCAGGCTT 966 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCT 197 |||||||||| || |||||||||||||||||||| ||||||| ||| |||||||| Sbjct 967 TCGTCCATTGCGGAAAATTCCTCACTGCTGCCTCCC-TAGGAGTCTGGGCCGTGTCT 1022 >seq26943 Length=6662 Score = 86.0 bits (94), Expect = 1e-14 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 154 AATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGG 213 || ||||| |||||||||||||||||||||| ||| |||||||||||| ||| ||||| Sbjct 5463 AAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCT 5404 Query 214 GACCTTCCTCTCAGA 228 || | ||||||| || Sbjct 5403 GATCATCCTCTCGGA 5389 >seq212149 Length=832 Score = 84.2 bits (92), Expect = 5e-14 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 138 CTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCT 197 || ||| |||||| || ||||| |||||||||||||||||||||| ||| |||||||| Sbjct 116 CTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCT 175 Query 198 CAGTTCCAATGTGG 211 |||| ||| ||||| Sbjct 176 CAGTCCCAGTGTGG 189 >seq195394 Length=3242 Score = 80.6 bits (88), Expect = 6e-13 Identities = 85/111 (77%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||||| ||||| ||| ||||| | | ||| |||| || Sbjct 1171 AAAAGAAGTTCACGACCCGTAGG-CCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTT 1229 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACC 191 |||||||||| || ||||| |||||||||||| | ||||||| ||| || Sbjct 1230 TCGTCCATTGCAGAAAATTCCCCACTGCTGCCTCTCATAGGAGTCTGGGCC 1280 >seq273862 Length=4756 Score = 78.8 bits (86), Expect = 2e-12 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 143 GTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTT 202 |||||||| || ||||| |||||||||||||||||||||| ||| |||||||||| | Sbjct 3905 GTCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAATC 3964 Query 203 CCAATGTG 210 ||| |||| Sbjct 3965 CCAGTGTG 3972 >seq335676 Length=212 Score = 77.0 bits (84), Expect = 7e-12 Identities = 88/117 (75%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 112 CCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGC 171 ||| ||||| | | ||| |||| || ||| |||||| || ||||| ||||||||| Sbjct 4 CCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCAGAAAATTCCCCACTGCTGC 63 Query 172 CTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 || |||||||| | | |||||||||||| ||| ||||| || | ||||||| || Sbjct 64 AACC-GTAGGAGTCTAGTCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGA 119 >seq145819 Length=358 Score = 77.0 bits (84), Expect = 7e-12 Identities = 75/97 (77%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || | | |||||| |||| ||||| || Sbjct 107 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTTGCCCATTGTCCAAGATTCCCCA 166 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201 |||||||| |||| ||||| || |||||||||||| Sbjct 167 CTGCTGCCCCCCGCGGGAGTCCGGGCCGTGTCTCAGT 203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1063841772672