Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq294625 203 3e-47 seq293582 192 5e-44 >seq294625 Length=4757 Score = 203 bits (224), Expect = 3e-47 Identities = 569/856 (66%), Gaps = 28/856 (3%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 |||||| |||||||| ||||| ||||| ||||||||||| | ||||||||||||||| Sbjct 4631 ATTTGGGAAATGTACAAGAAGGCCGAAGCCTCCTTCTGGACCGCCGAGGAGGTCGATTTG 4572 Query 61147 TCCAAAGACATGAATG--ACTGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203 || | ||| || | ||||||| | | | ||| ||| |||| ||| ||||| | Sbjct 4571 TCACAGGACC--AACGCCACTGGGACTCCCTCACCGA-CGGCGAACGACACTTCATCACT 4515 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || || | || ||||| ||||| || ||||| ||||| || || || | | | Sbjct 4514 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTATTGGAAAACCTAGCCGGAAGG 4455 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| | | ||||| ||||| | ||||| ||| ||||||||| |||||||| || || Sbjct 4454 TTCATGAAAGAGGTTCAAGTCGCCGAGGCTCGTGCTTTCTACGGATTCCAGATCGCAATC 4395 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGC 61382 ||||| | ||||| ||||||||||| | ||| |||| || ||||||| ||| | | Sbjct 4394 GAGAACATTCACTCCGAGATGTACAGCTTGCTCCTCGAGACCTACATCAAGGACTCCAAC 4335 Query 61383 G-GAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441 | || ||| | |||| || | ||||| || || || || ||| || Sbjct 4334 GACAAGATGA--GGCTGTTTCGCGCTGTGGAGACCATTCCTTGCGTCCAGAAGAAGGCCA 4277 Query 61442 ATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCAT 61501 ||||||| | | ||||| | | ||| | |||| ||||| | | || | Sbjct 4276 ATTGGGCGATGAGGTGGAT---CGATGGCTCGGAGTCGTTTGCGGAACGTATCATTGCCT 4220 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 | || ||||| || |||| ||| ||| || ||| ||||| |||||||||| Sbjct 4219 TCGCTTGCGTCGAAGGGATATTCTTCTCGGGAAGCTTCTGCGCTATCTTCTGGTTGAAGA 4160 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 |||| || | ||||| || |||||||| ||| |||||||| ||||| ||||| || Sbjct 4159 AACGCGGTTTGATGCCTGGATTGACCTTCTCCAACGAGTTGATTTCACGAGACGAAGGAT 4100 Query 61622 TGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAA-TCGTCCGT--CGG 61678 | || || ||||| || ||||| | ||| | || |||| || || | Sbjct 4099 TACACTGCGATTTCGCCTGCTTGCTCT----ACG--GTTTGCTGAACACGAAGGTGAGTG 4046 Query 61679 AGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGAC 61736 ||||||| || || || ||| || |||| ||||| || || |||| Sbjct 4045 AGGAGCGAGTTAAGGAAATCGTTTCCGACTCGGTGGAGATCGAGAGAGAGTTCGTCTG-- 3988 Query 61737 TGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGA 61796 ||||| || || | | ||| | || |||||| ||| || ||| |||| || || Sbjct 3987 CGACGCGTTACCGTGCGCTCTCGTGGGGATGAATGGTGACCTCATGAGTAAGTACATCGA 3928 Query 61797 ATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGA-TCTATAATACGAAAA 61855 || ||||| ||| | || ||||| ||||| ||| | | | || || | | | Sbjct 3927 GTTCGTTGCTGACAGGCTTTTGGTGTCATTGGG-ATGTGGGAAATTGTACAACGCACAGA 3869 Query 61856 ACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAAC 61915 | ||||| |||| ||||| |||||||| | | || ||||||||||| ||||||||| Sbjct 3868 ATCCATTCGATTGGATGGAGCTGATTTCGTTACAAGGGAAGACGAATTTCTTCGAGAAAA 3809 Query 61916 GTGTAGGCGACTATCA 61931 | || || || ||||| Sbjct 3808 GAGTTGGAGAGTATCA 3793 >seq293582 Length=2029 Score = 192 bits (212), Expect = 5e-44 Identities = 562/847 (66%), Gaps = 28/847 (3%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 ||||||||||| || ||||| || || ||||||| || || ||||| | || | ||| Sbjct 1838 ATGTACAAAAAAGCCGAAGCCTCGTTTTGGACGGCTGAAGAAGTCGACCTATCGCAGGAC 1779 Query 61156 ATGAATGACTGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 | | |||||| |||| | ||| ||| || | || ||||| | || || | || Sbjct 1778 CAGCGCCAATGGGAGTCGTTGACCGA-CGGCGAGCGCCACTTCATCACCCACGTCCTCGC 1720 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||||||||| |||||||| |||||| |||||| | | ||| ||| | |||| Sbjct 1719 CTTCTTTGCCGCCTCGGACGGCATCGTCCTGGAGAATCTTGCCGGACGCTTCATGAAGGA 1660 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 ||| || || |||||||||| |||||||| |||||||| ||||| ||||| |||| Sbjct 1659 GGTCCAGGTCGCGGAGGCGCGCGCCTTCTACGGGTTCCAGATCGCCATCGAGAACATCCA 1600 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCG-GAACGTGAA 61392 ||||||||||||||| | ||| | || | ||||||| ||| | || ||| ||| Sbjct 1599 CTCGGAGATGTACAGCCTCCTCCTGGAGTCCTACATCAAGGACTCCAACGAGAA---GAA 1543 Query 61393 -CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTT 61451 || ||||| | ||| | ||||| || || | ||||||| || | |||||| | Sbjct 1542 CCGGCTGTTCCACGCCGTGGAGACCATCCCCTGCATCCAGCGGAAGGCCCAGTGGGCCCT 1483 Query 61452 CAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 | |||||| | | | || | | || | || || | | || || || || Sbjct 1482 CCGCTGGATCGACGGGTC--CGAGT-CCTTCGCGGAGCGGATCGTCGCCTTCGCCTGTGT 1426 Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 |||||| | || ||| ||| || ||| ||||| ||| | ||||| || || || Sbjct 1425 CGAGGGCATCTTCTTCTCCGGAAGCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCT 1366 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631 ||||| || || || ||| ||| || ||||| || | ||||| ||| |||| || || Sbjct 1365 GATGCCGGGCCTAACGTTCTCCAACGAATTGATCTCGAGGGACGAAGGCCTGCACTGCGA 1306 Query 61632 TTTTGCTGTTTTGCTATTCAAACGCTATCTGG----TGAATCGTCCGTCGGAGGAGCGTG 61687 ||| || ||| | | ||| | | | | |||| | | |||||||| | Sbjct 1305 TTTCGCGTGCTTGATCT----ACGGTTTGTTGAACATGAA---GCTGAGCGAGGAGCGGG 1253 Query 61688 TGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGC 61747 | ||||||| || ||||| ||||| ||| ||| || ||||| || Sbjct 1252 TTAAGAAGATTGTGGCGGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTG- 1194 Query 61748 CCGTCT-CACTCATCGGCATGAATTGTGGACTAATGTCGCA-GTATATTGAATTTGTTGC 61805 |||| | || | || ||||| | | || ||| ||| |||||| || || || || Sbjct 1193 CCGTGTGGTCTGGTGGGGATGAACGGCGATCTGATG-AGCACGTATATCGAGTTCGTGGC 1135 Query 61806 CGACCGTCTGTTGGTCG-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTG 61864 || || ||||||| | || ||||| | | ||| || || | | || || |||| Sbjct 1134 GGATCGGTTGTTGGTGGCGTTGGGGTACG-GGAAGATGTACAAGGTGCAGAATCCGTTTG 1076 Query 61865 ATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCG 61924 ||| ||||| |||||||| || | || |||||||| || |||||||| | || || | Sbjct 1075 ATTGGATGGAGCTGATTTCGTTGCAGGGGAAGACGAACTTCTTCGAGAAGAGGGTTGGGG 1016 Query 61925 ACTATCA 61931 | || || Sbjct 1015 AGTACCA 1009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395320208423840