Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_031903.1
Length=172345
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 315 8e-81
seq169634 223 4e-53
seq300680 199 4e-46
seq250312 192 6e-44
seq10884 141 1e-28
seq8631 136 4e-27
seq455967 111 2e-19
seq293234 107 2e-18
seq36621 105 7e-18
seq264332 100 3e-16
seq292072 89.7 6e-13
seq32609 89.7 6e-13
>seq107965
Length=6474
Score = 315 bits (348), Expect = 8e-81
Identities = 399/549 (73%), Gaps = 0/549 (0%)
Strand=Plus/Plus
Query 160016 GCAATTGGTCTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTGGCTCTAT 160075
|| || ||| | || || || || || |||||||| |||| | || || ||| | ||
Sbjct 5921 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATAC 5980
Query 160076 AACGGTGGTCCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGCCTATATG 160135
|| |||||||||| |||| | || | |||||| | | || | | || |||
Sbjct 5981 AATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 6040
Query 160136 GGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATAC 160195
||||||||||||||||| || ||||| |||||||| | ||||| |||||||||
Sbjct 6041 GGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATAT 6100
Query 160196 TCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCT 160255
|| ||||| || || ||||| || ||| ||| | ||||||| | ||||| ||
Sbjct 6101 TCAGCTCCTGTTGCAGCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGC 6160
Query 160256 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAA 160315
|| || |||| ||||||||| || || ||||||||||| |||| ||| ||||||||||
Sbjct 6161 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 6220
Query 160316 GCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGT 160375
|| || ||||| || |||||||| || || |||||||| ||||| ||||| ||| ||||
Sbjct 6221 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGC 6280
Query 160376 GGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACG 160435
|| || || ||| |||||||||||| || |||| || ||| || | |||| || ||
Sbjct 6281 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACC 6340
Query 160436 ACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAAC 160495
||||||| | | || || | ||||||| || |||| ||| || || ||||| ||
Sbjct 6341 ACAGAAAATAAATCTGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAAT 6400
Query 160496 ATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAAC 160555
||||| || | ||||| || || || || ||||||||||||||||| || ||||||
Sbjct 6401 ATCGTAGCCGTTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAC 6460
Query 160556 TCACGCTCT 160564
|| || |||
Sbjct 6461 TCTCGTTCT 6469
>seq169634
Length=720
Score = 223 bits (246), Expect = 4e-53
Identities = 325/457 (71%), Gaps = 2/457 (0%)
Strand=Plus/Minus
Query 159823 TACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTGATGATCCCAACTCTGTTGGC 159882
|||| | ||||| || || | || ||||| || || |||||||||| || | ||| |
Sbjct 457 TACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGAC 398
Query 159883 AGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCA 159941
|||||| |||| || || |||| ||||| |||||||| || ||||| || ||||| |
Sbjct 397 CGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTA 339
Query 159942 TCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAACATCATCTCTGGTGCAGTTG 160001
| |||||||| || ||| || || | || || ||||| || || || |||| ||
Sbjct 338 TTCGTGAACCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTA 279
Query 160002 TTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCG 160061
|||| |||| || || ||| | || || || || || |||||||| ||||| | |
Sbjct 278 TTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTG 219
Query 160062 ACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCA 160121
| || ||| | || || |||||||||| |||| | || | |||||| | | ||
Sbjct 218 ATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTG 159
Query 160122 TCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGA 160181
| | || |||||||||||||||||||| || |||||| |||||||| || ||||
Sbjct 158 TAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGA 99
Query 160182 TCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCT 160241
| ||||||||| || ||| | || || ||||| ||||||| ||| | |||||||
Sbjct 98 TTGTTGTTGCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAA 39
Query 160242 TCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGG 160278
| ||||| || || || |||| ||||||||| ||
Sbjct 38 TTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGG 2
>seq300680
Length=3790
Score = 199 bits (220), Expect = 4e-46
Identities = 237/319 (74%), Gaps = 2/319 (1%)
Strand=Plus/Minus
Query 160256 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAA 160315
|| || |||| ||||||||| || || ||||||||||| |||| ||| ||||||||||
Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611
Query 160316 GCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGT 160375
| || ||||| || |||||||| || || |||||||| | || ||||| ||| |||
Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551
Query 160376 GGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACG 160435
| || || || |||||||||||| || |||| || |||||| | |||| || ||
Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTCTAGTTTAATCAG-GAAACC 492
Query 160436 ACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAG-AGACTTACAA 160494
| ||||| ||| | || | |||||||| ||||||||||| |||| | ||||| ||
Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432
Query 160495 CATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAA 160554
||||| || || ||||| || || || || ||| ||||||| ||||| || |||||
Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372
Query 160555 CTCACGCTCTCTGCACTTC 160573
||| || ||| | || |||
Sbjct 371 CTCTCGTTCTTTACATTTC 353
>seq250312
Length=8481
Score = 192 bits (212), Expect = 6e-44
Identities = 319/462 (69%), Gaps = 9/462 (2%)
Strand=Plus/Plus
Query 160319 GAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGA 160378
|| ||||| || |||| ||| | || |||||||| || || ||||| ||| | || |
Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633
Query 160379 TCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACA 160438
|| || ||| |||||||| ||| || |||| || ||||| | |||| || || |||
Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693
Query 160439 GAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATC 160498
| | ||| | || | ||||| | ||||||||||| | ||| | ||| || ||
Sbjct 1694 AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATT 1753
Query 160499 GTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCA 160558
|| || || ||||| || || ||||| |||||||||| | |||| || |||||||||
Sbjct 1754 GTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCA 1813
Query 160559 CGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTT 160618
|| | | | || |||||||| ||| |||||||| |||||||| | || |
Sbjct 1814 CGTTTTTTACATTTCTTCCTAGCTACTTGGCCT---------ATCTGGTTTATTGTGTTA 1864
Query 160619 GGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGAC 160678
||| | || ||||| | ||| || |||||||| | ||| | || || | | |||
Sbjct 1865 GGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGAC 1924
Query 160679 AACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATG 160738
| ||| | || || | || |||||||| || | ||||| | ||| || || |||
Sbjct 1925 AGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTATG 1984
Query 160739 GAAGTCATGCACGAGCGTAACGCTCACAACTTCCCTCTCGAC 160780
||||| ||| | || |||| ||||| || |||||||| |||
Sbjct 1985 GAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026
>seq10884
Length=5042
Score = 141 bits (156), Expect = 1e-28
Identities = 131/166 (79%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 160256 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAA 160315
|| || |||| ||||||||| || || ||||||||||| |||| ||| ||||||||||
Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848
Query 160316 GCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGT 160375
|| || ||||| || |||||||| || || |||||||| || || ||||| ||||||||
Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908
Query 160376 GGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTC 160421
|| || || ||| |||||| ||||| || ||| || |||||||
Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTCCTCGGTAACCTCTAGTC 3954
>seq8631
Length=609
Score = 136 bits (150), Expect = 4e-27
Identities = 127/160 (79%), Gaps = 1/160 (1%)
Strand=Plus/Minus
Query 160262 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAA 160321
|||| ||||||||| || || ||||||||||| |||| ||| |||||||||| || ||
Sbjct 329 GATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGAG 270
Query 160322 CACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCT 160381
||||| || |||||||| || || |||||||| | || ||||| |||||||| || ||
Sbjct 269 CACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTCC 210
Query 160382 CT-GTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGT 160420
|| ||| |||||||||||| || |||| || ||||||
Sbjct 209 CTAATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 170
>seq455967
Length=1404
Score = 111 bits (122), Expect = 2e-19
Identities = 142/191 (74%), Gaps = 6/191 (3%)
Strand=Plus/Plus
Query 162349 CTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAA 162408
|| ||||| || ||||| || || ||| | || | || | | ||||||||||||||
Sbjct 890 CTACGTGCCTATGACTTCGTTTCCCAGTAAAT-CACGCGACTAAAGATCCTGAATTTGAG 948
Query 162409 ACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATG---GTTGGCACCA 162465
|| ||||||||||| ||||| ||||| || |||||| ||||| | || | |||| | |
Sbjct 949 ACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTTCTTGGATGATGGCTCAA 1008
Query 162466 G-TTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCTAGAGGTAACGC 162524
| | ||||| | ||||| ||| || ||||| ||||||| ||||| || | || |||||
Sbjct 1009 GATCGATCAGCATCATGAAAACCTTATATTCTCTGAGGAGGTTCTACCACGTGGAAACGC 1068
Query 162525 ACTGTGAATGG 162535
|| | |||||
Sbjct 1069 TCT-TTAATGG 1078
>seq293234
Length=8108
Score = 107 bits (118), Expect = 2e-18
Identities = 103/132 (78%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 162396 TCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATG 162455
||| |||||||| || ||||||||||| ||||| |||| || |||||| ||||||| |
Sbjct 6889 TCCCGAATTTGAGACTTTCTACACCAAAAATATTTTCTTAAACGAAGGTATTCGTGCTTA 6948
Query 162456 GTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCTAG 162515
| ||||| | ||||| || ||||| || |||||||||||||||| ||||| || |
Sbjct 6949 GATGGCAGCTCAAGATCAGCCTCATGAAAAGCTTGTATTCCCTGAGGAGGTTCTACCCCG 7008
Query 162516 AGGTAACGCACT 162527
|| ||||| ||
Sbjct 7009 TGGAAACGCTCT 7020
>seq36621
Length=13842
Score = 105 bits (116), Expect = 7e-18
Identities = 210/310 (68%), Gaps = 1/310 (0%)
Strand=Plus/Minus
Query 160480 GGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATA 160539
|||||| ||||| || ||||| || ||||| || || | | | ||||||||| ||||
Sbjct 7969 GGAAGAAACTTATAATATCGTATATGCTCATGGTTATTTGGCT-GATTGATCTTCTAATA 7911
Query 160540 TGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGG 160599
||| || ||| |||| | | | | | || || || ||||||||||||||| ||||
Sbjct 7910 TGCTAGTTTCAACGACTCTCATTTTATATATTTTTTTCTAGCTGCTTGGCCTGTTTTTGG 7851
Query 160600 AATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTT 160659
|| ||||||||||| | ||| | | ||||| ||||| || ||||||| ||
Sbjct 7850 TATATGGTTCACTGCGTTGGGTACTAGCATTATGGCTTTCAACCTAAATGGTTGAAATCG 7791
Query 160660 CAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTTAA 160719
||||| | | | || | || | | || |||| ||||| | || | |||
Sbjct 7790 AAACCAATTGGTAGTTGATAGTCACAGCCGTGTAATGAATACTTGAGGTGATATCAGTAA 7731
Query 160720 CCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAACTTCCCTCTCGA 160779
|| ||| || | ||| | || ||||| || ||||| ||||| || | |||||| ||
Sbjct 7730 CCATGCTAACCTTGTTATGAATGTTATGCATGAACGTAATGCTCATAATTCCCCTCTAGA 7671
Query 160780 CCTTGCTGCT 160789
| | ||||||
Sbjct 7670 CTTGGCTGCT 7661
>seq264332
Length=996
Score = 100 bits (110), Expect = 3e-16
Identities = 79/95 (83%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 160520 GGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTC 160579
|| || ||||||||||||||||| || |||||||| || ||| | || ||||||||
Sbjct 272 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTA 213
Query 160580 GCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGC 160614
|||||||||||||| || || ||||||||||||||
Sbjct 212 GCTGCTTGGCCTGTAGTAGGCATCTGGTTCACTGC 178
>seq292072
Length=5858
Score = 89.7 bits (98), Expect = 6e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 162172 GCTTTTGACTCTACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGTTTCTGG 162231
|||||| || | || |||| || || ||||| || ||||| ||||| || || || |||
Sbjct 1554 GCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGG 1495
Query 162232 TCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTATGCTCTTC 162291
|| || ||||| || |||| ||| ||||| |||||||| |||||||||||| | ||
Sbjct 1494 TCCCAAATCTTTGGGGTTGCCTTTTTCAATAAACGTTGGTTACATTTCTTTATGTTATTT 1435
Query 162292 GT 162293
||
Sbjct 1434 GT 1433
>seq32609
Length=11843
Score = 89.7 bits (98), Expect = 6e-13
Identities = 94/124 (76%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 162389 CGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTC 162448
|||| |||| ||||||||| || ||||||||||| ||||| ||||| || | |||| |||
Sbjct 11666 CGGAAGATCTTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGCAGGTATTC 11607
Query 162449 GTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTC 162508
|||| ||| |||| | ||| | | ||||| ||| || |||| | |||| | ||||
Sbjct 11606 GTGCTTGGATGGCGGCTCAAGATTAGTCTCATGAAAACCTTATATTTCTTGAGAAGGTTC 11547
Query 162509 TGCC 162512
| ||
Sbjct 11546 TACC 11543
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548178667066800
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