Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq107965 315 8e-81 seq169634 223 4e-53 seq300680 199 4e-46 seq250312 192 6e-44 seq10884 141 1e-28 seq8631 136 4e-27 seq455967 111 2e-19 seq293234 107 2e-18 seq36621 105 7e-18 seq264332 100 3e-16 seq292072 89.7 6e-13 seq32609 89.7 6e-13 >seq107965 Length=6474 Score = 315 bits (348), Expect = 8e-81 Identities = 399/549 (73%), Gaps = 0/549 (0%) Strand=Plus/Plus Query 160016 GCAATTGGTCTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTGGCTCTAT 160075 || || ||| | || || || || || |||||||| |||| | || || ||| | || Sbjct 5921 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATAC 5980 Query 160076 AACGGTGGTCCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGCCTATATG 160135 || |||||||||| |||| | || | |||||| | | || | | || ||| Sbjct 5981 AATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 6040 Query 160136 GGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATAC 160195 ||||||||||||||||| || ||||| |||||||| | ||||| ||||||||| Sbjct 6041 GGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATAT 6100 Query 160196 TCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCT 160255 || ||||| || || ||||| || ||| ||| | ||||||| | ||||| || Sbjct 6101 TCAGCTCCTGTTGCAGCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGC 6160 Query 160256 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAA 160315 || || |||| ||||||||| || || ||||||||||| |||| ||| |||||||||| Sbjct 6161 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 6220 Query 160316 GCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGT 160375 || || ||||| || |||||||| || || |||||||| ||||| ||||| ||| |||| Sbjct 6221 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGC 6280 Query 160376 GGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACG 160435 || || || ||| |||||||||||| || |||| || ||| || | |||| || || Sbjct 6281 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACC 6340 Query 160436 ACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAAC 160495 ||||||| | | || || | ||||||| || |||| ||| || || ||||| || Sbjct 6341 ACAGAAAATAAATCTGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAAT 6400 Query 160496 ATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAAC 160555 ||||| || | ||||| || || || || ||||||||||||||||| || |||||| Sbjct 6401 ATCGTAGCCGTTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAC 6460 Query 160556 TCACGCTCT 160564 || || ||| Sbjct 6461 TCTCGTTCT 6469 >seq169634 Length=720 Score = 223 bits (246), Expect = 4e-53 Identities = 325/457 (71%), Gaps = 2/457 (0%) Strand=Plus/Minus Query 159823 TACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTGATGATCCCAACTCTGTTGGC 159882 |||| | ||||| || || | || ||||| || || |||||||||| || | ||| | Sbjct 457 TACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGAC 398 Query 159883 AGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCA 159941 |||||| |||| || || |||| ||||| |||||||| || ||||| || ||||| | Sbjct 397 CGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTA 339 Query 159942 TCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAACATCATCTCTGGTGCAGTTG 160001 | |||||||| || ||| || || | || || ||||| || || || |||| || Sbjct 338 TTCGTGAACCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTA 279 Query 160002 TTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCG 160061 |||| |||| || || ||| | || || || || || |||||||| ||||| | | Sbjct 278 TTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTG 219 Query 160062 ACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCA 160121 | || ||| | || || |||||||||| |||| | || | |||||| | | || Sbjct 218 ATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTG 159 Query 160122 TCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGA 160181 | | || |||||||||||||||||||| || |||||| |||||||| || |||| Sbjct 158 TAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGA 99 Query 160182 TCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCT 160241 | ||||||||| || ||| | || || ||||| ||||||| ||| | ||||||| Sbjct 98 TTGTTGTTGCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAA 39 Query 160242 TCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGG 160278 | ||||| || || || |||| ||||||||| || Sbjct 38 TTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGG 2 >seq300680 Length=3790 Score = 199 bits (220), Expect = 4e-46 Identities = 237/319 (74%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 160256 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAA 160315 || || |||| ||||||||| || || ||||||||||| |||| ||| |||||||||| Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611 Query 160316 GCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGT 160375 | || ||||| || |||||||| || || |||||||| | || ||||| ||| ||| Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551 Query 160376 GGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACG 160435 | || || || |||||||||||| || |||| || |||||| | |||| || || Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTCTAGTTTAATCAG-GAAACC 492 Query 160436 ACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAG-AGACTTACAA 160494 | ||||| ||| | || | |||||||| ||||||||||| |||| | ||||| || Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432 Query 160495 CATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAA 160554 ||||| || || ||||| || || || || ||| ||||||| ||||| || ||||| Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372 Query 160555 CTCACGCTCTCTGCACTTC 160573 ||| || ||| | || ||| Sbjct 371 CTCTCGTTCTTTACATTTC 353 >seq250312 Length=8481 Score = 192 bits (212), Expect = 6e-44 Identities = 319/462 (69%), Gaps = 9/462 (2%) Strand=Plus/Plus Query 160319 GAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGA 160378 || ||||| || |||| ||| | || |||||||| || || ||||| ||| | || | Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633 Query 160379 TCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACA 160438 || || ||| |||||||| ||| || |||| || ||||| | |||| || || ||| Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693 Query 160439 GAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATC 160498 | | ||| | || | ||||| | ||||||||||| | ||| | ||| || || Sbjct 1694 AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATT 1753 Query 160499 GTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCA 160558 || || || ||||| || || ||||| |||||||||| | |||| || ||||||||| Sbjct 1754 GTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCA 1813 Query 160559 CGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTT 160618 || | | | || |||||||| ||| |||||||| |||||||| | || | Sbjct 1814 CGTTTTTTACATTTCTTCCTAGCTACTTGGCCT---------ATCTGGTTTATTGTGTTA 1864 Query 160619 GGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGAC 160678 ||| | || ||||| | ||| || |||||||| | ||| | || || | | ||| Sbjct 1865 GGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGAC 1924 Query 160679 AACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATG 160738 | ||| | || || | || |||||||| || | ||||| | ||| || || ||| Sbjct 1925 AGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTATG 1984 Query 160739 GAAGTCATGCACGAGCGTAACGCTCACAACTTCCCTCTCGAC 160780 ||||| ||| | || |||| ||||| || |||||||| ||| Sbjct 1985 GAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGAC 2026 >seq10884 Length=5042 Score = 141 bits (156), Expect = 1e-28 Identities = 131/166 (79%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 160256 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAA 160315 || || |||| ||||||||| || || ||||||||||| |||| ||| |||||||||| Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848 Query 160316 GCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGT 160375 || || ||||| || |||||||| || || |||||||| || || ||||| |||||||| Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908 Query 160376 GGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTC 160421 || || || ||| |||||| ||||| || ||| || ||||||| Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTCCTCGGTAACCTCTAGTC 3954 >seq8631 Length=609 Score = 136 bits (150), Expect = 4e-27 Identities = 127/160 (79%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 160262 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAA 160321 |||| ||||||||| || || ||||||||||| |||| ||| |||||||||| || || Sbjct 329 GATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCCGAG 270 Query 160322 CACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCT 160381 ||||| || |||||||| || || |||||||| | || ||||| |||||||| || || Sbjct 269 CACAACATTCTTATGCACCCATTTCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTCC 210 Query 160382 CT-GTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGT 160420 || ||| |||||||||||| || |||| || |||||| Sbjct 209 CTAATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 170 >seq455967 Length=1404 Score = 111 bits (122), Expect = 2e-19 Identities = 142/191 (74%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 162349 CTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAA 162408 || ||||| || ||||| || || ||| | || | || | | |||||||||||||| Sbjct 890 CTACGTGCCTATGACTTCGTTTCCCAGTAAAT-CACGCGACTAAAGATCCTGAATTTGAG 948 Query 162409 ACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATG---GTTGGCACCA 162465 || ||||||||||| ||||| ||||| || |||||| ||||| | || | |||| | | Sbjct 949 ACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTTCTTGGATGATGGCTCAA 1008 Query 162466 G-TTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCTAGAGGTAACGC 162524 | | ||||| | ||||| ||| || ||||| ||||||| ||||| || | || ||||| Sbjct 1009 GATCGATCAGCATCATGAAAACCTTATATTCTCTGAGGAGGTTCTACCACGTGGAAACGC 1068 Query 162525 ACTGTGAATGG 162535 || | ||||| Sbjct 1069 TCT-TTAATGG 1078 >seq293234 Length=8108 Score = 107 bits (118), Expect = 2e-18 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 162396 TCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATG 162455 ||| |||||||| || ||||||||||| ||||| |||| || |||||| ||||||| | Sbjct 6889 TCCCGAATTTGAGACTTTCTACACCAAAAATATTTTCTTAAACGAAGGTATTCGTGCTTA 6948 Query 162456 GTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCTAG 162515 | ||||| | ||||| || ||||| || |||||||||||||||| ||||| || | Sbjct 6949 GATGGCAGCTCAAGATCAGCCTCATGAAAAGCTTGTATTCCCTGAGGAGGTTCTACCCCG 7008 Query 162516 AGGTAACGCACT 162527 || ||||| || Sbjct 7009 TGGAAACGCTCT 7020 >seq36621 Length=13842 Score = 105 bits (116), Expect = 7e-18 Identities = 210/310 (68%), Gaps = 1/310 (0%) Strand=Plus/Minus Query 160480 GGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATA 160539 |||||| ||||| || ||||| || ||||| || || | | | ||||||||| |||| Sbjct 7969 GGAAGAAACTTATAATATCGTATATGCTCATGGTTATTTGGCT-GATTGATCTTCTAATA 7911 Query 160540 TGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGG 160599 ||| || ||| |||| | | | | | || || || ||||||||||||||| |||| Sbjct 7910 TGCTAGTTTCAACGACTCTCATTTTATATATTTTTTTCTAGCTGCTTGGCCTGTTTTTGG 7851 Query 160600 AATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTT 160659 || ||||||||||| | ||| | | ||||| ||||| || ||||||| || Sbjct 7850 TATATGGTTCACTGCGTTGGGTACTAGCATTATGGCTTTCAACCTAAATGGTTGAAATCG 7791 Query 160660 CAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTTAA 160719 ||||| | | | || | || | | || |||| ||||| | || | ||| Sbjct 7790 AAACCAATTGGTAGTTGATAGTCACAGCCGTGTAATGAATACTTGAGGTGATATCAGTAA 7731 Query 160720 CCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAACTTCCCTCTCGA 160779 || ||| || | ||| | || ||||| || ||||| ||||| || | |||||| || Sbjct 7730 CCATGCTAACCTTGTTATGAATGTTATGCATGAACGTAATGCTCATAATTCCCCTCTAGA 7671 Query 160780 CCTTGCTGCT 160789 | | |||||| Sbjct 7670 CTTGGCTGCT 7661 >seq264332 Length=996 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 160520 GGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTC 160579 || || ||||||||||||||||| || |||||||| || ||| | || |||||||| Sbjct 272 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTA 213 Query 160580 GCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGC 160614 |||||||||||||| || || |||||||||||||| Sbjct 212 GCTGCTTGGCCTGTAGTAGGCATCTGGTTCACTGC 178 >seq292072 Length=5858 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 162172 GCTTTTGACTCTACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGTTTCTGG 162231 |||||| || | || |||| || || ||||| || ||||| ||||| || || || ||| Sbjct 1554 GCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGG 1495 Query 162232 TCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTATGCTCTTC 162291 || || ||||| || |||| ||| ||||| |||||||| |||||||||||| | || Sbjct 1494 TCCCAAATCTTTGGGGTTGCCTTTTTCAATAAACGTTGGTTACATTTCTTTATGTTATTT 1435 Query 162292 GT 162293 || Sbjct 1434 GT 1433 >seq32609 Length=11843 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 162389 CGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTC 162448 |||| |||| ||||||||| || ||||||||||| ||||| ||||| || | |||| ||| Sbjct 11666 CGGAAGATCTTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGCAGGTATTC 11607 Query 162449 GTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTC 162508 |||| ||| |||| | ||| | | ||||| ||| || |||| | |||| | |||| Sbjct 11606 GTGCTTGGATGGCGGCTCAAGATTAGTCTCATGAAAACCTTATATTTCTTGAGAAGGTTC 11547 Query 162509 TGCC 162512 | || Sbjct 11546 TACC 11543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548178667066800