Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq107965 291 1e-73 seq169634 205 1e-47 seq250312 199 5e-46 seq300680 149 8e-31 seq10884 111 2e-19 seq8631 104 3e-17 seq58055 102 1e-16 seq292072 95.1 2e-14 seq254652 93.3 5e-14 seq33322 86.0 8e-12 >seq107965 Length=6474 Score = 291 bits (322), Expect = 1e-73 Identities = 424/596 (71%), Gaps = 6/596 (1%) Strand=Plus/Plus Query 189019 TATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCAC 189078 ||||||||||| || || | ||| | || | ||| || || || ||| | || Sbjct 5876 TATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCAGCTATAGGTTTGCAT 5935 Query 189079 TTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTC 189138 || ||||| || |||||||| | || | ||||| ||| | ||||| |||||||||| Sbjct 5936 TTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGTCCTTAT 5995 Query 189139 CAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACGCCT---ACATGGGTCGTGAGTGG 189195 |||| | || | |||||| | | || | || || | ||||||||||||||||| Sbjct 5996 GAACTAATTGTTCTACACTTCTTACTTGG--TGTA-GCTTGTTACATGGGTCGTGAGTGG 6052 Query 189196 GAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGCATTGCTTACTCTGCACCTGTT 189255 ||||| || ||||| |||||||| ||||||| |||| || || || |||||| Sbjct 6053 GAACTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCTGTT 6112 Query 189256 GCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCA 189315 ||||| || | || || || |||| || |||||||||| || ||||| | Sbjct 6113 GCAGCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGT 6172 Query 189316 ATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 189375 ||||| | || || ||| || ||||||| |||| |||| ||||| || ||||||||| Sbjct 6173 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 6232 Query 189376 ATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTC 189435 || || |||||||| || |||||||| || || || ||||| |||| || || || ||| Sbjct 6233 ATTCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTATTC 6292 Query 189436 TCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAG 189495 || ||||||||||| | || ||||||| || | | |||||||| |||| | Sbjct 6293 AGTGCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAATAAA 6352 Query 189496 TCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCT 189555 || || | ||||||| ||||| | |||||| ||||| || || ||||| || | | Sbjct 6353 TCTGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCCGTT 6412 Query 189556 CATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTC 189611 ||||| ||||| || || | |||||||||||||| ||||||||||| ||||| Sbjct 6413 CATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTC 6468 >seq169634 Length=720 Score = 205 bits (226), Expect = 1e-47 Identities = 319/448 (71%), Gaps = 10/448 (2%) Strand=Plus/Minus Query 188878 AACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCG-CTGCAAC 188936 |||||||| || | || ||||| ||||| ||||||||||||| ||| | | | ||||| Sbjct 450 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTAC-CTTATTGACCGCAAC 392 Query 188937 CATCTGC-TTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCG 188995 |||| || || |||| || | ||||| || || || || |||||||| || || | Sbjct 391 T-TCTGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTG 333 Query 188996 AACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTT 189055 |||| || ||| || || | ||||||||||| || || || |||| || | ||| Sbjct 332 AACCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTATTCCTA 273 Query 189056 CATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGT 189115 | || || || ||| | || || ||||| || |||||||| || || | ||||| | Sbjct 272 CTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAAT 213 Query 189116 GGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACG 189175 || | ||||| |||||||||| |||| | || | |||||| | | || | || | Sbjct 212 GGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGG--TGTA-G 156 Query 189176 CCT---ACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCT 189232 | | |||||||||||||||||||||| || |||||| |||||||| |||||||| Sbjct 155 CTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTG 96 Query 189233 GCATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTG 189292 |||| || || || |||||||||| ||| | || || || || |||| || ||| Sbjct 95 TTGTTGCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTG 36 Query 189293 GTCAAGGTTCTTTCTCTGACGCAATGCC 189320 ||||||| || ||||| | ||||| Sbjct 35 GTCAAGGAAGCTTTTCTGATGGTATGCC 8 >seq250312 Length=8481 Score = 199 bits (220), Expect = 5e-46 Identities = 320/461 (69%), Gaps = 9/461 (2%) Strand=Plus/Plus Query 189367 GAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGT 189426 ||||||||||| || | |||| | || |||||||| || || || ||||| | || | Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633 Query 189427 TCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACT 189486 || || ||| || |||| |||||| | || ||| || || | | |||||||| Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693 Query 189487 GAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATC 189546 | | || | || | ||||| | || || ||||||| ||||| || || || Sbjct 1694 AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATT 1753 Query 189547 GTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCC 189606 || || |||||||| ||||| ||||| | ||||||| | |||| ||||||||||| Sbjct 1754 GTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCA 1813 Query 189607 CGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTC 189666 |||| | || |||||||| ||| | ||||| ||||||||||| | | Sbjct 1814 CGTTTTTTACATTTCTTCCTAGCTACTTGGCC---------TATCTGGTTTATTGTGTTA 1864 Query 189667 GGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGAT 189726 || ||||||| ||||| | |||||| ||||| || | ||| ||||||| | | || Sbjct 1865 GGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGAC 1924 Query 189727 GGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATG 189786 ||||| ||| ||| | || || ||||| || | | ||| ||||| ||||||||| Sbjct 1925 AGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTATG 1984 Query 189787 GAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTGA 189827 ||||| ||| |||| |||| ||||| || |||||||| || Sbjct 1985 GAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGA 2025 >seq300680 Length=3790 Score = 149 bits (164), Expect = 8e-31 Identities = 220/309 (71%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 189304 TTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAA 189363 || ||||| | ||||| | || || ||| || ||||||| |||| |||| ||||| Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611 Query 189364 GCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGT 189423 | ||||||||||| || |||||||| || |||||||| | || || ||||| ||| Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551 Query 189424 GGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACC 189483 | || || || || ||||||||||| | || ||||| | | || |||||| Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTAATCAGGAAACC 492 Query 189484 ACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAG-AAACGTACAA 189542 | |||| || | || | |||||||| || || |||||||||| |||| || || Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432 Query 189543 CATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAA 189602 ||||| || |||||||| ||||| || || | ||||||| ||||| |||||||| Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372 Query 189603 CTCCCGTTC 189611 ||| ||||| Sbjct 371 CTCTCGTTC 363 >seq10884 Length=5042 Score = 111 bits (122), Expect = 2e-19 Identities = 124/163 (76%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 189304 TTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAA 189363 || ||||| | ||||| | || || ||| || ||||||| |||| |||| ||||| Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848 Query 189364 GCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGT 189423 || ||||||||||| || |||||||| || |||||||| || || || ||||| ||||| Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908 Query 189424 GGTTCACTGTTCTCCGCAATGCATGGTTCACTC-GTTACCTCT 189465 || || || ||| || || |||||||| ||| || |||||| Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTC-CTCGGTAACCTCT 3950 >seq8631 Length=609 Score = 104 bits (114), Expect = 3e-17 Identities = 104/134 (78%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 189333 TGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTT 189392 ||| || ||||||| |||| |||| ||||| || ||||||||||| || |||||||| || Sbjct 306 TGGTACTTTCAACTTCATGATTGTATTCCAGGCCGAGCACAACATTCTTATGCACCCATT 247 Query 189393 CCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACT-GTTCTCCGCAATGCATGGTT 189451 |||||||| | || || ||||| ||||| || || || ||| || |||||||||| Sbjct 246 TCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTCCCTAATTCAGTGCTATGCATGGTT 187 Query 189452 CACTCGTTACCTCT 189465 | | || |||||| Sbjct 186 CCTTGGTAACCTCT 173 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/158 (74%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 189076 CACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCT 189135 || || ||||| || |||||||| || || | ||||| ||| | ||||| ||||||||| Sbjct 497 CATTTTTACCCAATATGGGAAGCAGCATCCATTGATGAATGGTTATACAATGGTGGTCCT 438 Query 189136 TTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACGCCT---ACATGGGTCGTGAG 189192 | |||| | || | |||||| | | || | || || | |||||||||||||| Sbjct 437 TATGAACTAATTGTTCTACACTTCTTACTTGG--TGTA-GCTTGTTACATGGGTCGTGAG 381 Query 189193 TGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGAT 189230 |||||||| || |||||| | |||||| |||||||| Sbjct 380 TGGGAACTTAGTTTCCGTCTGGATATGCGCCCTTGGAT 343 >seq58055 Length=1185 Score = 102 bits (112), Expect = 1e-16 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 190525 ACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCC 190584 |||| || || |||||||| ||||| ||| | |||| | || | || | || || | Sbjct 1 ACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTGCTTTGCTATGCGCTATTC 60 Query 190585 ATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAG 190644 ||| || |||||||| |||||||| | |||||||||||| ||||| || || | Sbjct 61 ATGATGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCTGTG 120 Query 190645 CATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGT 190704 | || || | || |||| ||||| || ||||| ||||||||||| || || || |||| Sbjct 121 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGT 180 Query 190705 C 190705 | Sbjct 181 C 181 >seq292072 Length=5858 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 190656 ACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTT 190715 || |||| ||||| || ||||| ||||||||||| || || || ||||| ||||||||| Sbjct 1542 ACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGTCCCAAATCTTT 1483 Query 190716 GGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGT 190765 || ||||| || ||||| | ||||| |||||||||||| | ||||| Sbjct 1482 GGGGTTGCCTTTTTCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 1433 >seq254652 Length=6058 Score = 93.3 bits (102), Expect = 5e-14 Identities = 198/291 (68%), Gaps = 5/291 (2%) Strand=Plus/Plus Query 188976 AGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCAT 189035 ||| |||||||| || | ||||| | | || || | ||||||||||| || || Sbjct 668 AGATATTGATGGTATTCATGAACCTATTTTTACATCTCTACTTTATGGAAACAATATTAT 727 Query 189036 CTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGA 189095 || |||| |||| | ||| | || | || | ||| | || || |||| || | ||| Sbjct 728 TTCAGGTGTTGTTATTCCTACTTCTACAGCTACAGGTTTGCATTTTTACCTAATATAGGA 787 Query 189096 AGCCGCCTCACTCGATGAGTGGCTC-TACAACGGTGGTCCTTTCCAACTGGTAGTCTTCC 189154 ||| | | | ||||| ||| | ||||| |||||||||| |||| | || | | Sbjct 788 AGCAACATTTGTTGATGAATGGTTTATACAATGGTGGTCCTTATGAACTAATTGTACTAC 847 Query 189155 ACTTCCTCATCGGCATCTA-CGCCT-ACATGGGTCGTGAGTGGGAACTCTCTTACCGTCT 189212 ||||| | | || | || || | |||||||||| ||||||||||| || |||||| Sbjct 848 ACTTCTTACTTGG--TGTAGCGTGTTACATGGGTCGCGAGTGGGAACTTAGTTTCCGTCT 905 Query 189213 CGGTATGCGTCCTTGGATCTGCATTGCTTACTCTGCACCTGTTGCAGCAGC 189263 ||| |||| |||| ||| |||| || || || ||| || |||| || Sbjct 906 GGGTGTGCGACCTTTGATTGTTGTTGCATATTCAGCTCCTATTACAGCTGC 956 >seq33322 Length=15627 Score = 86.0 bits (94), Expect = 8e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 190470 GCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCC 190529 ||||| || || || || ||||||| || || || || ||||||||||| ||||||| Sbjct 6657 GCAGCTATATTTCGATTTATCCTCTTTTTTCAAGGATTTCATAACTGGACATTGAACCCA 6716 Query 190530 TTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGT 190589 || || |||||||| ||||| ||| | |||| | || | || | || || |||||| Sbjct 6717 TTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTGCTTTGCTATGCGCTATTCATGGT 6776 Query 190590 GTGACTGTAGAGAATAC 190606 | || ||||| ||||| Sbjct 6777 GCTACCGTAGAAAATAC 6793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 630403081044000