Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27]
463,906 sequences; 661,937,708 total letters
Query= NC_031906.1
Length=198190
Score E
Sequences producing significant alignments: (Bits) Value
seq107965 291 1e-73
seq169634 205 1e-47
seq250312 199 5e-46
seq300680 149 8e-31
seq10884 111 2e-19
seq8631 104 3e-17
seq58055 102 1e-16
seq292072 95.1 2e-14
seq254652 93.3 5e-14
seq33322 86.0 8e-12
>seq107965
Length=6474
Score = 291 bits (322), Expect = 1e-73
Identities = 424/596 (71%), Gaps = 6/596 (1%)
Strand=Plus/Plus
Query 189019 TATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCAC 189078
||||||||||| || || | ||| | || | ||| || || || ||| | ||
Sbjct 5876 TATGGAAACAATATTATTTTAGGTACCATTATTCCTATTTCTGCAGCTATAGGTTTGCAT 5935
Query 189079 TTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTC 189138
|| ||||| || |||||||| | || | ||||| ||| | ||||| ||||||||||
Sbjct 5936 TTTTACCCAATATGGGAAGCAACATCTGTTGATGAATGGTTATACAATGGTGGTCCTTAT 5995
Query 189139 CAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACGCCT---ACATGGGTCGTGAGTGG 189195
|||| | || | |||||| | | || | || || | |||||||||||||||||
Sbjct 5996 GAACTAATTGTTCTACACTTCTTACTTGG--TGTA-GCTTGTTACATGGGTCGTGAGTGG 6052
Query 189196 GAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGCATTGCTTACTCTGCACCTGTT 189255
||||| || ||||| |||||||| ||||||| |||| || || || ||||||
Sbjct 6053 GAACTTAGTTTTCGTCTGGGTATGCGAACTTGGATGGTTGTTGCATATTCAGCTCCTGTT 6112
Query 189256 GCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCA 189315
||||| || | || || || |||| || |||||||||| || ||||| |
Sbjct 6113 GCAGCTGCGAGTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGT 6172
Query 189316 ATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 189375
||||| | || || ||| || ||||||| |||| |||| ||||| || |||||||||
Sbjct 6173 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 6232
Query 189376 ATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTC 189435
|| || |||||||| || |||||||| || || || ||||| |||| || || || |||
Sbjct 6233 ATTCTTATGCACCCATTTCACATGCTAGGTGTAGCTGGTGTAATCGGCGGCTCCCTATTC 6292
Query 189436 TCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAG 189495
|| ||||||||||| | || ||||||| || | | |||||||| |||| |
Sbjct 6293 AGTGCTATGCATGGTTCCTTGGTAACCTCTTGTTTGATCAGGGAAACCACAGAAAATAAA 6352
Query 189496 TCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCT 189555
|| || | ||||||| ||||| | |||||| ||||| || || ||||| || | |
Sbjct 6353 TCTGCTAATGAAGGTTACAGATTTGGTCTAGAAGATGAAACTTATAATATCGTAGCCGTT 6412
Query 189556 CATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTC 189611
||||| ||||| || || | |||||||||||||| ||||||||||| |||||
Sbjct 6413 CATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTC 6468
>seq169634
Length=720
Score = 205 bits (226), Expect = 1e-47
Identities = 319/448 (71%), Gaps = 10/448 (2%)
Strand=Plus/Minus
Query 188878 AACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCG-CTGCAAC 188936
|||||||| || | || ||||| ||||| ||||||||||||| ||| | | | |||||
Sbjct 450 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTAC-CTTATTGACCGCAAC 392
Query 188937 CATCTGC-TTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCG 188995
|||| || || |||| || | ||||| || || || || |||||||| || || |
Sbjct 391 T-TCTGTATTTATTATCGCTTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTG 333
Query 188996 AACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTT 189055
|||| || ||| || || | ||||||||||| || || || |||| || | |||
Sbjct 332 AACCTGTTTATGGATCTCTAAGTTATGGAAACAATATTATTTCAGGTGTCATTATTCCTA 273
Query 189056 CATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGT 189115
| || || || ||| | || || ||||| || |||||||| || || | ||||| |
Sbjct 272 CTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAAT 213
Query 189116 GGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACG 189175
|| | ||||| |||||||||| |||| | || | |||||| | | || | || |
Sbjct 212 GGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGG--TGTA-G 156
Query 189176 CCT---ACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCT 189232
| | |||||||||||||||||||||| || |||||| |||||||| ||||||||
Sbjct 155 CTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTG 96
Query 189233 GCATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTG 189292
|||| || || || |||||||||| ||| | || || || || |||| || |||
Sbjct 95 TTGTTGCATATTCAGCTTCTGTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTG 36
Query 189293 GTCAAGGTTCTTTCTCTGACGCAATGCC 189320
||||||| || ||||| | |||||
Sbjct 35 GTCAAGGAAGCTTTTCTGATGGTATGCC 8
>seq250312
Length=8481
Score = 199 bits (220), Expect = 5e-46
Identities = 320/461 (69%), Gaps = 9/461 (2%)
Strand=Plus/Plus
Query 189367 GAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGT 189426
||||||||||| || | |||| | || |||||||| || || || ||||| | || |
Sbjct 1574 GAGCACAACATTCTTAGGCACTCATTTCACATGCTAGGCGTAGCTGGTGTAATTGGCAGC 1633
Query 189427 TCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACT 189486
|| || ||| || |||| |||||| | || ||| || || | | ||||||||
Sbjct 1634 TCCCTATTCAGTGCTATGCGTGGTTCCTTGGTAACCCCTAGTTTGATCAGGGAAACCACA 1693
Query 189487 GAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATC 189546
| | || | || | ||||| | || || ||||||| ||||| || || ||
Sbjct 1694 AAGAATGAATAAGCTAATGAAGGTTATATATTCGGTCAAGAAGGAGAAAATTAGAATATT 1753
Query 189547 GTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCC 189606
|| || |||||||| ||||| ||||| | ||||||| | |||| |||||||||||
Sbjct 1754 GTAGCCGCTCATGGTTATTTTGGTCGATTGATCTTCCGACATGCTAGTTTCAACAACTCA 1813
Query 189607 CGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTC 189666
|||| | || |||||||| ||| | ||||| ||||||||||| | |
Sbjct 1814 CGTTTTTTACATTTCTTCCTAGCTACTTGGCC---------TATCTGGTTTATTGTGTTA 1864
Query 189667 GGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGAT 189726
|| ||||||| ||||| | |||||| ||||| || | ||| ||||||| | | ||
Sbjct 1865 GGTATCAGCACTATGGCTTACAACCTAAATGGTTTTAGTTTCCATCAATCTGTAGTCGAC 1924
Query 189727 GGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATG 189786
||||| ||| ||| | || || ||||| || | | ||| ||||| |||||||||
Sbjct 1925 AGTCAATGTCATGTAATTAATACTTGGGCTGATATCATTAACTGTGCTAACCTTGGTATG 1984
Query 189787 GAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTGA 189827
||||| ||| |||| |||| ||||| || |||||||| ||
Sbjct 1985 GAAGTTATGTATGAATGTAATGCTCATAATTTCCCTCTAGA 2025
>seq300680
Length=3790
Score = 149 bits (164), Expect = 8e-31
Identities = 220/309 (71%), Gaps = 2/309 (1%)
Strand=Plus/Minus
Query 189304 TTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAA 189363
|| ||||| | ||||| | || || ||| || ||||||| |||| |||| |||||
Sbjct 670 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 611
Query 189364 GCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGT 189423
| ||||||||||| || |||||||| || |||||||| | || || ||||| |||
Sbjct 610 GTTGAGCACAACATTCTTATGCACCCATTTCACATGCTAAGCGTAGCTGGTGTACTCGTC 551
Query 189424 GGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACC 189483
| || || || || ||||||||||| | || ||||| | | || ||||||
Sbjct 550 AGCTCCCTATTTAATGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTAATCAGGAAACC 492
Query 189484 ACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAG-AAACGTACAA 189542
| |||| || | || | |||||||| || || |||||||||| |||| || ||
Sbjct 491 AGAGAAAATGAATTTGCTAATGAAGGTTACAAATTCGGTCAAGAAGAAGAAAACTTATAA 432
Query 189543 CATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAA 189602
||||| || |||||||| ||||| || || | ||||||| ||||| ||||||||
Sbjct 431 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGGTCTTCCAGTATGCTAGTTTCAACAA 372
Query 189603 CTCCCGTTC 189611
||| |||||
Sbjct 371 CTCTCGTTC 363
>seq10884
Length=5042
Score = 111 bits (122), Expect = 2e-19
Identities = 124/163 (76%), Gaps = 2/163 (1%)
Strand=Plus/Plus
Query 189304 TTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAA 189363
|| ||||| | ||||| | || || ||| || ||||||| |||| |||| |||||
Sbjct 3789 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 3848
Query 189364 GCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGT 189423
|| ||||||||||| || |||||||| || |||||||| || || || ||||| |||||
Sbjct 3849 GCTGAGCACAACATTCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 3908
Query 189424 GGTTCACTGTTCTCCGCAATGCATGGTTCACTC-GTTACCTCT 189465
|| || || ||| || || |||||||| ||| || ||||||
Sbjct 3909 GGCTCCCTATTCATTGCTATACATGGTTC-CTCGGTAACCTCT 3950
>seq8631
Length=609
Score = 104 bits (114), Expect = 3e-17
Identities = 104/134 (78%), Gaps = 1/134 (1%)
Strand=Plus/Minus
Query 189333 TGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTT 189392
||| || ||||||| |||| |||| ||||| || ||||||||||| || |||||||| ||
Sbjct 306 TGGTACTTTCAACTTCATGATTGTATTCCAGGCCGAGCACAACATTCTTATGCACCCATT 247
Query 189393 CCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACT-GTTCTCCGCAATGCATGGTT 189451
|||||||| | || || ||||| ||||| || || || ||| || ||||||||||
Sbjct 246 TCACATGCTAGACGTAGCTGGTGTATTCGGCGGCTCCCTAATTCAGTGCTATGCATGGTT 187
Query 189452 CACTCGTTACCTCT 189465
| | || ||||||
Sbjct 186 CCTTGGTAACCTCT 173
Score = 93.3 bits (102), Expect = 5e-14
Identities = 117/158 (74%), Gaps = 6/158 (4%)
Strand=Plus/Minus
Query 189076 CACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCT 189135
|| || ||||| || |||||||| || || | ||||| ||| | ||||| |||||||||
Sbjct 497 CATTTTTACCCAATATGGGAAGCAGCATCCATTGATGAATGGTTATACAATGGTGGTCCT 438
Query 189136 TTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACGCCT---ACATGGGTCGTGAG 189192
| |||| | || | |||||| | | || | || || | ||||||||||||||
Sbjct 437 TATGAACTAATTGTTCTACACTTCTTACTTGG--TGTA-GCTTGTTACATGGGTCGTGAG 381
Query 189193 TGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGAT 189230
|||||||| || |||||| | |||||| ||||||||
Sbjct 380 TGGGAACTTAGTTTCCGTCTGGATATGCGCCCTTGGAT 343
>seq58055
Length=1185
Score = 102 bits (112), Expect = 1e-16
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 190525 ACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCC 190584
|||| || || |||||||| ||||| ||| | |||| | || | || | || || |
Sbjct 1 ACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTGCTTTGCTATGCGCTATTC 60
Query 190585 ATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAG 190644
||| || |||||||| |||||||| | |||||||||||| ||||| || || |
Sbjct 61 ATGATGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGCGCAAATACATTCTGTG 120
Query 190645 CATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGT 190704
| || || | || |||| ||||| || ||||| ||||||||||| || || || ||||
Sbjct 121 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGT 180
Query 190705 C 190705
|
Sbjct 181 C 181
>seq292072
Length=5858
Score = 95.1 bits (104), Expect = 2e-14
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 190656 ACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTT 190715
|| |||| ||||| || ||||| ||||||||||| || || || ||||| |||||||||
Sbjct 1542 ACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAATCGCTTTTGGTCCCAAATCTTT 1483
Query 190716 GGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGT 190765
|| ||||| || ||||| | ||||| |||||||||||| | |||||
Sbjct 1482 GGGGTTGCCTTTTTCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 1433
>seq254652
Length=6058
Score = 93.3 bits (102), Expect = 5e-14
Identities = 198/291 (68%), Gaps = 5/291 (2%)
Strand=Plus/Plus
Query 188976 AGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCAT 189035
||| |||||||| || | ||||| | | || || | ||||||||||| || ||
Sbjct 668 AGATATTGATGGTATTCATGAACCTATTTTTACATCTCTACTTTATGGAAACAATATTAT 727
Query 189036 CTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGA 189095
|| |||| |||| | ||| | || | || | ||| | || || |||| || | |||
Sbjct 728 TTCAGGTGTTGTTATTCCTACTTCTACAGCTACAGGTTTGCATTTTTACCTAATATAGGA 787
Query 189096 AGCCGCCTCACTCGATGAGTGGCTC-TACAACGGTGGTCCTTTCCAACTGGTAGTCTTCC 189154
||| | | | ||||| ||| | ||||| |||||||||| |||| | || | |
Sbjct 788 AGCAACATTTGTTGATGAATGGTTTATACAATGGTGGTCCTTATGAACTAATTGTACTAC 847
Query 189155 ACTTCCTCATCGGCATCTA-CGCCT-ACATGGGTCGTGAGTGGGAACTCTCTTACCGTCT 189212
||||| | | || | || || | |||||||||| ||||||||||| || ||||||
Sbjct 848 ACTTCTTACTTGG--TGTAGCGTGTTACATGGGTCGCGAGTGGGAACTTAGTTTCCGTCT 905
Query 189213 CGGTATGCGTCCTTGGATCTGCATTGCTTACTCTGCACCTGTTGCAGCAGC 189263
||| |||| |||| ||| |||| || || || ||| || |||| ||
Sbjct 906 GGGTGTGCGACCTTTGATTGTTGTTGCATATTCAGCTCCTATTACAGCTGC 956
>seq33322
Length=15627
Score = 86.0 bits (94), Expect = 8e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 190470 GCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCC 190529
||||| || || || || ||||||| || || || || ||||||||||| |||||||
Sbjct 6657 GCAGCTATATTTCGATTTATCCTCTTTTTTCAAGGATTTCATAACTGGACATTGAACCCA 6716
Query 190530 TTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGT 190589
|| || |||||||| ||||| ||| | |||| | || | || | || || ||||||
Sbjct 6717 TTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTGCTTTGCTATGCGCTATTCATGGT 6776
Query 190590 GTGACTGTAGAGAATAC 190606
| || ||||| |||||
Sbjct 6777 GCTACCGTAGAAAATAC 6793
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 630403081044000
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