Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carthamus_20tinctorius_20[genbank_20GCA_5F001633085.1_202016-04-27] 463,906 sequences; 661,937,708 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq229264 84.2 3e-11 >seq229264 Length=2642 Score = 84.2 bits (92), Expect = 3e-11 Identities = 169/251 (67%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 162580 AACTACAGGGAAAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAATCACGAAAGC 162639 || ||||||||| || | || ||||| | ||| ||||| ||||| |||||| Sbjct 904 AATTACAGGGAAGCATACGGGATCTTTGCCTGCAACGGCATTCTCTTCAACCACGAATCA 963 Query 162640 TCACGCAGAGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGT 162699 | |||||||| || | || || || | |||||| |||| || ||| || | Sbjct 964 CCTCGCAGAGGTGAAAACTTTGTGACCAGAAAGATCACAAGAGCAGTGGGCCGGATCAAG 1023 Query 162700 GTGGGACTCCAAAGTGATCTACAACTTGGAAACCTCAATGCCCGACGTGACTGGGGACAC 162759 | || ||||| || | || | || || || | || | | |||||||| | Sbjct 1024 ATTGGCCTCCAGAGCAAGCTGTTTTTAGGGAATCTGCAGGCTTCAAGAGACTGGGGGTTC 1083 Query 162760 GCCAAAGACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTAT 162819 || |||||||| ||||| |||||| ||||||| |||||||||||||| || || || Sbjct 1084 GCAGGGGACTACGTGGAGGCAATGTGGCTGATGCTACAGCAAGAGAAGCCCGACGACTAC 1143 Query 162820 GTGATCGCAAC 162830 ||| | ||||| Sbjct 1144 GTGGTGGCAAC 1154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 687449549104560