Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq88594 172 5e-41 seq107510 104 2e-20 seq86661 98.7 9e-19 seq38581 95.1 1e-17 seq73006 93.3 4e-17 seq82449 89.7 5e-16 seq55495 86.0 6e-15 seq93558 78.8 9e-13 seq61545 78.8 9e-13 seq39177 78.8 9e-13 seq105495 77.0 3e-12 seq73276 77.0 3e-12 seq81924 73.4 4e-11 >seq88594 Length=874 Score = 172 bits (190), Expect = 5e-41 Identities = 147/182 (81%), Gaps = 12/182 (7%) Strand=Plus/Minus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| |||| |||||||| ||||||| ||||||| ||||||||||||||||||||| ||| Sbjct 868 GGCACACGGGGGATGCCTTGGCTCTCAGAGGCGATGAAGGACGTGATAAGCTGCGATAAG 809 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATA 120 || |||||||| ||| ||| ||||||||||| |||| ||||||||||| |||| ||||| Sbjct 808 CTGCGGGGATTAGCAAATATGAATTGATCCGCAGATTTCCGAATGGGGAAACCTAATATA 749 Query 121 TTGGAGATATAT--CATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAG 178 || || ||||| ||||| || || ||| || ||||||||||||||||| Sbjct 748 CTGAAGGTATATTGCATAAAGC----------GCAAACCTGCTGAACTGAAACATCTAAG 699 Query 179 TA 180 || Sbjct 698 TA 697 >seq107510 Length=626 Score = 104 bits (114), Expect = 2e-20 Identities = 136/183 (74%), Gaps = 14/183 (8%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| | |||||| ||||||||||||| |||||| ||||| |||| Sbjct 603 GGTGGATGCCTTGGCGATGATAGGCGACGAAGGACGTGATAGCCTGCGATAAGCTTCGGG 544 Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC-------GATAT 119 || ||||| || | |||||||| |||| ||||||||||| ||||| | | Sbjct 543 GAGCTGGCAAATTAGCTTTGATCCGGAGATTTCCGAATGGGGAAACCCACCTGCAAAGGT 484 Query 120 ATTGGA-GATATAT-CATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAA 177 || | | ||| || |||| | || ||| |||||||| || |||||||||||||| | Sbjct 483 ATCGCATGATGAATACATA--GTTATGCG--AGGCGAACCGGGTGAACTGAAACATCTCA 428 Query 178 GTA 180 ||| Sbjct 427 GTA 425 >seq86661 Length=905 Score = 98.7 bits (108), Expect = 9e-19 Identities = 136/181 (75%), Gaps = 12/181 (7%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| | |||||| ||||||||||||| |||||| ||||| |||| Sbjct 259 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTGATAGCCTGCGATAAGCTTCGGG 200 Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAAC---CCGATA--TAT 121 || ||||| || | |||||||| |||| ||||||||||| ||| |||| | ||| Sbjct 199 GAGCTGGCAAATTAGCTTTGATCCGGAGATTTCCGAATGGGGGAACCCACCGAAAGGTAT 140 Query 122 TG-GAGATATAT-CATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGT 179 || || | || ||| | ||| ||| |||| ||| | |||||||||||||| ||| Sbjct 139 TGTCAGCTGAATACAT-AGGCT-GGC--AAGGCAAACCGAGTGAACTGAAACATCTCAGT 84 Query 180 A 180 | Sbjct 83 A 83 >seq38581 Length=2243 Score = 95.1 bits (104), Expect = 1e-17 Identities = 94/117 (80%), Gaps = 5/117 (4%) Strand=Plus/Minus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| ||||||||||||| ||| | |||| ||||||||||||| | |||||||||| Sbjct 1395 GGCACACGGTGGATGCCTTGGCACCAGGAGCCGAAGAAGGACGTAGGAGCCTGCGAAAAG 1336 Query 61 CTACGGGGA-TTGGCACATACGAA--TTGATCCGTAGATATCCGAATGGGGCAACCC 114 | |||||| |||||| || |||| ||||||| ||| ||||||||||| ||||| Sbjct 1335 CCTCGGGGAGTTGGCA-AT-CGAACTGTGATCCGAGGATGTCCGAATGGGGAAACCC 1281 >seq73006 Length=1194 Score = 93.3 bits (102), Expect = 4e-17 Identities = 136/187 (73%), Gaps = 9/187 (5%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| | ||||||||||| ||| | |||||| ||||||||| || ||||| |||| Sbjct 580 GCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGC 639 Query 62 TACGGGGATTG-GCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATA 120 | |||||| || ||| | || |||||||| |||| ||||||||||| |||||| | Sbjct 640 TGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCTT 699 Query 121 TTGGAGATATATCAT----AACGC-TAGG--CGTTAGGCGAACGTGGGGAACTGAAACAT 173 || | | || ||| || | |||| | | ||||||| || |||||||||||| Sbjct 700 TTAG-GTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACAT 758 Query 174 CTAAGTA 180 ||||||| Sbjct 759 CTAAGTA 765 >seq82449 Length=979 Score = 89.7 bits (98), Expect = 5e-16 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| || ||||||| |||||||||| || ||||||| |||| | ||| Sbjct 510 GGTGGATGCCTTGGCGCTGAGAGGCGATGAAGGACGTGGTACGCTGCGATAAGCCATGGG 451 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || || | | | ||||||| | ||| ||||||||||| ||||| Sbjct 450 GAGCCGCGAACAGGCTTTGATCCATGGATTTCCGAATGGGGAAACCC 404 >seq55495 Length=1535 Score = 86.0 bits (94), Expect = 6e-15 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| || |||||||| |||||||||| | |||||||||||| ||| Sbjct 1389 GGTGGATGCCTTGGCACTAGGAGGCGATGAAGGACGTGGCACGCTGCGAAAAGCCTGGGG 1448 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || || | | ||||||| ||| ||||||||||||||||| Sbjct 1449 GAGCTGCGAGCAAGCTTTGATCCCGGGATGTCCGAATGGGGCAACCC 1495 >seq93558 Length=637 Score = 78.8 bits (86), Expect = 9e-13 Identities = 82/108 (76%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 7 CGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGG 66 |||||||||||| ||| || ||||||| |||||||||| || ||||||| |||| || Sbjct 43 CGGTGGATGCCTTGGCGCTGAGAGGCGATGAAGGACGTGGTACGCTGCGATAAGCCTTGG 102 Query 67 GGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 ||| || | | ||||||| ||| ||||||||||| ||||| Sbjct 103 GGAGCTGCGAACGAGCTTTGATCCAGGGATTTCCGAATGGGGAAACCC 150 >seq61545 Length=976 Score = 78.8 bits (86), Expect = 9e-13 Identities = 82/108 (76%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 7 CGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGG 66 |||||||||||| ||| || ||||||| |||||||||| || ||||||| |||| || Sbjct 273 CGGTGGATGCCTTGGCGCTGAGAGGCGATGAAGGACGTGGTACGCTGCGATAAGCCTTGG 332 Query 67 GGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 ||| || | | ||||||| ||| ||||||||||| ||||| Sbjct 333 GGAGCTGCGAACGAGCTTTGATCCAGGGATTTCCGAATGGGGAAACCC 380 >seq39177 Length=2185 Score = 78.8 bits (86), Expect = 9e-13 Identities = 82/108 (76%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 7 CGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGG 66 |||||||||||| ||| || ||||||| |||||||||| || ||||||| |||| || Sbjct 1779 CGGTGGATGCCTTGGCGCTGAGAGGCGATGAAGGACGTGGTACGCTGCGATAAGCCTTGG 1720 Query 67 GGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 ||| || | | ||||||| ||| ||||||||||| ||||| Sbjct 1719 GGAGCTGCGAACGAGCTTTGATCCAGGGATTTCCGAATGGGGAAACCC 1672 >seq105495 Length=648 Score = 77.0 bits (84), Expect = 3e-12 Identities = 81/107 (76%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| || ||||||| |||||||||| || ||||||| |||| ||| Sbjct 376 GGTGGATGCCTTGGCGCTGAGAGGCGATGAAGGACGTGGTACGCTGCGATAAGCCTTGGG 435 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || || | | ||||||| ||| ||||||||||| ||||| Sbjct 436 GAGCTGCGAACGAGCTTTGATCCAGGGATCTCCGAATGGGGAAACCC 482 >seq73276 Length=1187 Score = 77.0 bits (84), Expect = 3e-12 Identities = 85/111 (77%), Gaps = 3/111 (3%) Strand=Plus/Plus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65 ||||||||||||| ||| | |||| ||| ||||||||| | ||||||| |||| || Sbjct 193 ACGGTGGATGCCTTGGCACCAGGAGCCGATGAAGGACGTAGGAGGCTGCGATAAGCCTCG 252 Query 66 GGGATTGGCACATACGA--ATTGATCCGTAGATATCCGAATGGGGCAACCC 114 |||| || || ||| |||||||| ||| ||||||||||| ||||| Sbjct 253 GGGAGCTGC-CAACCGAGCGTTGATCCGAGGATTTCCGAATGGGGGAACCC 302 >seq81924 Length=988 Score = 73.4 bits (80), Expect = 4e-11 Identities = 88/117 (75%), Gaps = 7/117 (6%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||| ||| |||| ||||||||||||| || |||||| |||| Sbjct 705 GCAAACGGTGGATGCCTTGGCAACTGGAGCCGAAGAAGGACGTAGCAATCTGCGATAAGC 764 Query 62 TACGGGGATTGGCACATA--CGA--ATTGATCCGTAGATATCCGAATGGGGCAACCC 114 |||||| || ||| ||| |||||||| | | ||||||||||| ||||| Sbjct 765 CTCGGGGA---GCTGATAAGCGAGCTTTGATCCGAGGGTGTCCGAATGGGGAAACCC 818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476182952409