Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= AAMG01001182.1 Length=261 Score E Sequences producing significant alignments: (Bits) Value seq106954 100 4e-19 seq74744 86.0 9e-15 seq102207 75.2 2e-11 seq92456 75.2 2e-11 >seq106954 Length=632 Score = 100 bits (110), Expect = 4e-19 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 73 TCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGGTGGATG 132 |||||| ||||||||||| || || || |||||||||||||| ||| | ||||||| | Sbjct 278 TCTTCCCACACCTTCTGGTGGCGGCGCTGGAGCGAGCAATCGCGCTCGGCGAGGTGGACG 219 Query 133 GCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGGTTGGTCAGGTAC 192 ||| | | | |||||| ||| || ||||| || | ||| || || || ||||||| Sbjct 218 GCGCGCCGCGTCCCGTCGCCCAGCACCTGCACCTCGATGTGGCGCGGCTTCTCCAGGTAC 159 Query 193 TTTTCCAGGTAGACC 207 || || ||||||||| Sbjct 158 TTCTCGAGGTAGACC 144 >seq74744 Length=1148 Score = 86.0 bits (94), Expect = 9e-15 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 54 CAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATC 113 |||| | || | ||||| || ||||| |||||||||||||| || |||| |||||| || Sbjct 1062 CAGGACGGGGGAGGGCGCCTCCTCCAGCACCTTCTGGTGACGGCGCTGCAACGAGCAGTC 1121 Query 114 GCGGTCGCCCAGGTGGATGGCGTGGCC 140 ||| |||||||||||||| || || || Sbjct 1122 GCGCTCGCCCAGGTGGATCGCCTGACC 1148 >seq102207 Length=686 Score = 75.2 bits (82), Expect = 2e-11 Identities = 103/144 (72%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 54 CAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATC 113 |||| ||| || ||||| || || | | |||||||| || || ||||||||||| || Sbjct 168 CAGGTACGGCGCGGGCGCCTCCTCGACCAGCTTCTGGTTGCGCCGCTGCAGCGAGCAGTC 227 Query 114 GCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTG 173 |||| ||||| | || | ||| || ||| ||||| ||| || || | || ||||| Sbjct 228 GCGGGTGCCCACGACGACGACGTTCCCGTGGGTGTCGGCCAGCACCTGGGCCTCGACGTG 287 Query 174 ACGTGGGTTGGTCAGGTACTTTTC 197 || || ||| |||| |||| || Sbjct 288 GCGGGGCTTGTCCAGGAACTTCTC 311 >seq92456 Length=816 Score = 75.2 bits (82), Expect = 2e-11 Identities = 97/133 (73%), Gaps = 1/133 (1%) Strand=Plus/Minus Query 49 TCGTCCAGGCCCGGTGCCGGCGCTTCTTCCAGT-ACCTTCTGGTGACGACGTTGCAGCGA 107 ||||||| ||| || || || || || ||| | ||||||||||| || || || ||||| Sbjct 380 TCGTCCATGCCGGGGGCGGGGGCCTCCTCCGATCACCTTCTGGTGGCGGCGCTGGAGCGA 321 Query 108 GCAATCGCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTC 167 ||| ||||| ||| |||||||| | | ||||| || |||| | || ||||| || Sbjct 320 GCAGTCGCGCTCGAACAGGTGGACGACTTGGCCGTGCGTGTCGCCGAACACCTGCACCTC 261 Query 168 CACGTGACGTGGG 180 | ||| || ||| Sbjct 260 GATGTGGCGCGGG 248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 735047510430