Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq98213 219 4e-55 seq113287 150 1e-34 seq34631 147 2e-33 seq89670 138 9e-31 seq38581 125 6e-27 seq55495 123 2e-26 seq26518 118 9e-25 seq33310 114 1e-23 seq18705 113 4e-23 seq66738 107 2e-21 seq37154 100 2e-19 seq18499 95.1 1e-17 seq58431 93.3 4e-17 seq24532 91.5 1e-16 seq4283 82.4 6e-14 seq12406 73.4 3e-11 >seq98213 Length=732 Score = 219 bits (242), Expect = 4e-55 Identities = 145/161 (90%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||| Sbjct 55 TCGAGTTGCAGACTACGATCCGGACTACGACCGGTTTTCTGGGATTGGCTCCCCCTCGCG 114 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 ||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 115 GGTTGGCAACCCTCTGTACCGGCCATTGTATGACGTGTGTAGCCCTACCCATAAGGGCCA 174 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||| ||||||||||||||||||||||||||||||||| Sbjct 175 TGATGACCTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 215 >seq113287 Length=565 Score = 150 bits (166), Expect = 1e-34 Identities = 132/162 (81%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACA-CTTTCTGGGATTAGCTCCCCCTCGC 59 |||||||||||| | ||||||| ||| || || |||| |||||||||| |||||||| Sbjct 202 TCGAGTTGCAGAGTGCAATCCGAACT--GAGACGGCTTTTGGGGATTAGCTACCCCTCGC 145 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 | | | || ||| |||| |||||||| ||||||| ||||| || | |||||||| Sbjct 144 GAGGTCGCAACCCACTGTCACCGCCATTGTAGCACGTGTGTAGCCCAACGCGTAAGGGCC 85 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||||||||||||||||||||||| || |||| Sbjct 84 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGCTTATCAC 43 >seq34631 Length=2721 Score = 147 bits (162), Expect = 2e-33 Identities = 131/162 (81%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGG-GATTAGCTCCCCCTCGC 59 |||||||||||| |||||||| ||| || || || ||| ||||||||| |||| || Sbjct 1233 TCGAGTTGCAGAGAACAATCCGAACT--GAGACGGCTTTTGGAGATTAGCTCACCCTTGC 1290 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 ||| | || |||| |||| |||||||| ||||||| ||||| | | |||||||| Sbjct 1291 GGGATTGCTGCCCACTGTCACCGCCATTGTAGCACGTGTGTAGCCCAGCGCGTAAGGGCC 1350 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||||||||||||||||||||||| || |||| Sbjct 1351 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGCTTATCAC 1392 >seq89670 Length=862 Score = 138 bits (152), Expect = 9e-31 Identities = 129/162 (80%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTG-GGATTAGCTCCCCCTCGC 59 |||||||||||| |||||||||||| || ||| ||| | ||||| ||||| ||||| Sbjct 521 TCGAGTTGCAGAGAACAATCCGGACT--GAGACAGTTTTTAAGGATTCGCTCCGACTCGC 578 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 | | || |||| |||| | |||||||| ||||||| ||||| | |||||||| | Sbjct 579 GCCATTGCTTCCCTTTGTAAATGCCATTGTAACACGTGTGTAGCCCAATTCATAAGGGTC 638 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||| |||||||||| |||||||||||||||| || |||||| Sbjct 639 ATGACGACTTGACGTGATCCCCACCTTCCTCCAGTATGTCAC 680 >seq38581 Length=2243 Score = 125 bits (138), Expect = 6e-27 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 ||||||||||||| | ||||| ||| || |||| ||||||| ||||| |||| || Sbjct 2061 TCGAGTTGCAGACCCCGATCCGAACTGAGACCAGCTTTTTGGGATTCGCTCCACCTCACG 2120 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || ||||| |||| |||||||| | | ||||||||| | |||||||| || Sbjct 2121 GTCTCGCAGCCCTTTGTACTGGCCATTGTAGCATGCGTGAAGCCCAAGACATAAGGGGCA 2180 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCG 152 ||| || ||||||||||||||||||||||||| Sbjct 2181 TGATGATTTGACGTCATCCCCACCTTCCTCCG 2212 >seq55495 Length=1535 Score = 123 bits (136), Expect = 2e-26 Identities = 126/162 (78%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACA-CTTTCTGGGATTAGCTCCCCCTCGC 59 |||||||||||| | ||||| | ||| || || |||| || ||| ||||| |||| Sbjct 273 TCGAGTTGCAGAGTGCAATCTGAACT--GAGACGGCTTTTTGAGATCAGCTCGGTGTCGC 216 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 |||| ||| |||| |||||||| ||||||| ||||| |||||||||| Sbjct 215 CACCTGGCTTCCCACTGTCACCGCCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGCC 156 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||||||||||||||||||||||| ||||||| Sbjct 155 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGCTTGTCAC 114 >seq26518 Length=4982 Score = 118 bits (130), Expect = 9e-25 Identities = 118/152 (78%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 ||||||||||||| ||||||| ||| || |||| ||| ||| ||||| ||| ||| Sbjct 4338 TCGAGTTGCAGACCCCAATCCGAACTGAGACCGGCTTTATGG-ATTCGCTCCACCTTGCG 4396 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || || || |||| |||||||| | ||||| |||||| | |||||| || Sbjct 4397 GTATCGCAGCTCTTTGTACCGGCCATTGTAGCATGTGTGCAGCCCTGGACTTAAGGGGCA 4456 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCG 152 ||| |||||||||||||||||||||||||||| Sbjct 4457 TGATGACTTGACGTCATCCCCACCTTCCTCCG 4488 >seq33310 Length=2932 Score = 114 bits (126), Expect = 1e-23 Identities = 124/162 (77%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATAC-ACTTTCTGGGATTAGCTCCCCCTCGC 59 |||||||||||| |||||||||||| || || ||||| |||||| ||||| |||| Sbjct 2388 TCGAGTTGCAGAGAACAATCCGGACT--GAGACGACTTTTGGGGATTCGCTCCGATTCGC 2445 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 | || || | ||| |||||||| ||||||| ||||| |||||||||| | Sbjct 2446 ATCATTGCTTCCTTTTGTGATCGCCATTGTAACACGTGTGTAGCCCAGCCCATAAGGGTC 2505 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||| |||||||||| |||| ||||||||| |||| | |||| Sbjct 2506 ATGACGACTTGACGTAATCCTCACCTTCCTTCGGTATATCAC 2547 >seq18705 Length=8712 Score = 113 bits (124), Expect = 4e-23 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| ||||||||| ||| | ||| |||| ||||||| || ||||| Sbjct 6053 CGAGTTGCAGCCTACAATCCAAACTGAGGACGGGTTTTTGGGGTTAGCTCACCATCGCGA 6112 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 6113 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 6172 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||| ||||||||| ||||||||||||| || |||| Sbjct 6173 GATGACTTAACGTCATCCTCACCTTCCTCCGGCTTATCAC 6212 >seq66738 Length=1393 Score = 107 bits (118), Expect = 2e-21 Identities = 120/159 (75%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 ||| |||||||| |||||||| |||| | || | ||| |||||| ||||| || | Sbjct 404 TCGGGTTGCAGAGAACAATCCGAACTAGGGTA-ATTTTTGGGGATTTGCTCCGGCTGTCA 346 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | || |||| ||| |||||||||| ||||||| ||||| | ||||||| || Sbjct 345 CCATTGCCTCCCTTTGTGATTACCATTGTAACACGTGTGTAGCCCAGCTTATAAGGGTCA 286 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTC 159 ||| |||||||||| |||||||||||||||| | |||| Sbjct 285 TGACGACTTGACGTGATCCCCACCTTCCTCCAGCATGTC 247 >seq37154 Length=2396 Score = 100 bits (110), Expect = 2e-19 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| || ||| || | || ||| | |||||| Sbjct 2204 CGAGTTGCAGCCTGCAATCCGAACTGAGACCGGGTTTTTGAGGTTGGCTTGCTCTCGCGA 2263 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | || || || ||| |||||||| ||||||| ||||| | |||||| ||| Sbjct 2264 GGTTGCAGCTCTTTGTCCCGGCCATTGTAGCACGTGTGTAGCCCAGGGCGTAAGGGGCAT 2323 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | ||||||||||||||| ||||||||||||| || |||| Sbjct 2324 GCTGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 2363 >seq18499 Length=10962 Score = 95.1 bits (104), Expect = 1e-17 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| |||| || ||| || | || || | |||||| Sbjct 7107 CGAGTTGCAGCCTGCAATCCGAACTAAGACCGGGTTTTTGAGGTTGGCATACTCTCGCGA 7048 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | || ||| ||| |||||||| ||||||| |||| | |||||| ||| Sbjct 7047 GGTTGCATCCCATTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGACGTAAGGGGCAT 6988 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||| ||| |||||||||||||||| |||| Sbjct 6987 GATGACTTGACGTCGTCCTCACCTTCCTCCGGTTTATCAC 6948 >seq58431 Length=1748 Score = 93.3 bits (102), Expect = 4e-17 Identities = 116/158 (73%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 ||||||||||||| | ||||| ||| || |||| | |||| || || | || Sbjct 179 TCGAGTTGCAGACCCCGATCCGAACTGTGAACGGCTTTACGAGATTGGCATCCTGTTGCC 238 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || |||| ||||| |||||||| ||||||| ||||| | ||||||||| Sbjct 239 AGGTAGCTGCCCGCTGTACCATCCATTGTAGCACGTGTGTAGCCCCGGACGTAAGGGCCA 298 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTC-CGGTTTG 157 ||| ||||||||||| ||||| |||||||| | ||||| Sbjct 299 TGATGACTTGACGTCGTCCCCTCCTTCCTCTCTGTTTG 336 >seq24532 Length=5214 Score = 91.5 bits (100), Expect = 1e-16 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| || ||| || | |||||| || |||| | Sbjct 2685 CGAGTTGCAGCCTGCAATCCGAACTGAGACCGGGTTTTTGAGGTTAGCTTACCTTCGCAG 2744 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | || | | ||| |||||||| ||||||| ||||| | |||||| ||| Sbjct 2745 GGTTGCATCTCATTGTCCCGGCCATTGTAGCACGTGTGTAGCCCAGGACGTAAGGGGCAT 2804 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | ||||||||||||||| | ||||||||||| || |||| Sbjct 2805 GCTGACTTGACGTCATCCTCTCCTTCCTCCGGCTTATCAC 2844 >seq4283 Length=44760 Score = 82.4 bits (90), Expect = 6e-14 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 84 CATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCAC 143 ||||||| ||||||| |||| |||||||| ||||| ||||||||||||||| ||| Sbjct 22673 CATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCATGATGACTTGACGTCATCCTCAC 22614 Query 144 CTTCCTCCGGTTTGTCAC 161 |||||||||| || |||| Sbjct 22613 CTTCCTCCGGCTTATCAC 22596 >seq12406 Length=15941 Score = 73.4 bits (80), Expect = 3e-11 Identities = 111/157 (71%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 4 AGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGGT 63 ||||||| ||||||| | ||| || ||| |||| ||||||| | || | ||| Sbjct 726 AGTTGCAACCTACAATTTGAACTGAGAATGGGTTTTTGGGGTTAGCTCACACTTGTGGGA 667 Query 64 TGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGA 123 | ||| |||| ||| |||||||| | | || |||| |||||||| ||||| Sbjct 666 TTGCGACCCTTTGTCCTAGCCATTGTAGCATGCGTC--GCCCAGGGCATAAGGGGCATGA 609 Query 124 GGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCA 160 |||||||| ||| || ||||||||||| | || ||| Sbjct 608 TGACTTGACATCACCCTCACCTTCCTCCAGCTTATCA 572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415461636330