Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= AAMG01002110.1 Length=382 Score E Sequences producing significant alignments: (Bits) Value seq79372 100 6e-19 seq63126 73.4 9e-11 >seq79372 Length=1043 Score = 100 bits (110), Expect = 6e-19 Identities = 104/136 (76%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 245 TCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGAGCCT 304 || |||||||||||||||||||| || ||||| || ||| ||||| |||||||| ||| Sbjct 732 TCGACCACCCAGGTGTCCTTGGTGCCCCCGCCCTGGCTCGAATTGACCACCAGCGACCCT 673 Query 305 TCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCG---GGTTTCCTTGCCCGAG 361 ||||||| |||||||| ||||| || || || || | || | | | ||||| Sbjct 672 TCCTTCATGGCCACGCGCGTCAACCCGCCCGGGACGACCCGCACGCCGTTCGCGCCCGTC 613 Query 362 AGCACGAAGGGTCGCA 377 ||||||||||| |||| Sbjct 612 AGCACGAAGGGCCGCA 597 >seq63126 Length=1522 Score = 73.4 bits (80), Expect = 9e-11 Identities = 94/128 (73%), Gaps = 5/128 (4%) Strand=Plus/Plus Query 258 TGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGAGCCTTCCTTCAGCGCCA 317 |||||||||| || ||||| || ||||| || |||||||| || || ||| || | Sbjct 688 TGTCCTTGGTGCCGCCGCCCTGGCTTGAGTTCACCACCAGCGACCCCTCGCGCAGGGCGA 747 Query 318 CGCGGGTCAAGCCACCGGGCACCAGGCGGGTTTCCTTG----CCCGAGAGCACGAAGGGT 373 ||||||||| ||| |||||||||| | | ||||| || | |||||||||||| Sbjct 748 CGCGGGTCAGGCCGCCGGGCACCAC-CTGCACCCCTTGGCTGCCGGTGAGCACGAAGGGG 806 Query 374 CGCAAGTC 381 || || || Sbjct 807 CGGAAATC 814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1118503803200