Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= AAMG01002120.1 Length=347 Score E Sequences producing significant alignments: (Bits) Value seq83228 141 2e-31 seq54484 138 2e-30 seq115798 86.0 1e-14 >seq83228 Length=964 Score = 141 bits (156), Expect = 2e-31 Identities = 191/265 (72%), Gaps = 6/265 (2%) Strand=Plus/Plus Query 49 TTCACCGTGGTTGCCCTCGGCGTTGTTCAGGCCGAACAGGCGCTCCTTGATGATTCCATC 108 ||| ||||| ||||| || | ||| ||| |||||||| |||||||| | ||| ||| Sbjct 162 TTCGCCGTGATTGCCTTCCTCATTGGTCAACCCGAACAGCCGCTCCTTCAGGATCGGATC 221 Query 109 GCGCTCGTTCCACAGGGCCAGGCCCAGGCACCAAC---GTTGCGCCTTGTCACTGAACCC 165 || | ||||| || || ||| ||| ||||| | | ||| || | | ||| || Sbjct 222 CCGACCATTCCAGAGTGCGAGGGACAGACACCACCTCAGATGCCGCTCGCC---GAAACC 278 Query 166 CGCCAGGCCGTCCTCGCCCCAACGGTAGGCGCGGCTGCGTGCATGGTCATGGGGGAAGTA 225 | | ||||| |||||||| || ||||| ||| || || || || || ||||| || Sbjct 279 GCCGATACCGTCTTCGCCCCAGCGATAGGCACGGGACCGGGCGTGATCGTGAGGGAAATA 338 Query 226 GGCCCAGGCGTCGCCATCGGCGCTGTAGTCTTCGCGCACCGTGCCCCATTGGCGTTCGCT 285 | ||| || ||||| |||| || |||||||| || || |||||||||||||| ||||| Sbjct 339 CGTCCACGCATCGCCCCCGGCACTATAGTCTTCTCGGACGGTGCCCCATTGGCGGTCGCT 398 Query 286 CAGGTAGGGGCCCCACTCGCGCCAG 310 || || || |||||| | |||||| Sbjct 399 GAGATACGGACCCCACGCCCGCCAG 423 >seq54484 Length=1431 Score = 138 bits (152), Expect = 2e-30 Identities = 191/265 (72%), Gaps = 8/265 (3%) Strand=Plus/Minus Query 50 TCACCGTGGTTGCCCTCGGCGTTGTTCAGGCCGAACAGGCGCTCCTTGATGATTCCATCG 109 || ||||||||||||||| ||||| | ||||||||||| || ||||||| ||| ||| Sbjct 402 TCGCCGTGGTTGCCCTCGCCGTTGGTGAGGCCGAACAGCCGTTCCTTGAGGATCGGGTCG 343 Query 110 CGCTCGTTCCACAGGGCCAGGCCCAGGC--ACCAA--CGTTGCGCCTTGTCACTGAACCC 165 | |||||||||||| | ||| ||| | || || ||| ||| | || | | Sbjct 342 TGGCGGTTCCACAGGGCGACGCCGAGGTTGAGGAAGCCGAAGCG----GTCGCAGACCGC 287 Query 166 CGCCAGGCCGTCCTCGCCCCAACGGTAGGCGCGGCTGCGTGCATGGTCATGGGGGAAGTA 225 | ||||||||||||||||||| ||||| || || || || ||||| | |||| Sbjct 286 CCCCAGGCCGTCCTCGCCCCAGCGGTACGCCCGTGCCCGCGCCTGGTCGAACGTGAAGGC 227 Query 226 GGCCCAGGCGTCGCCATCGGCGCTGTAGTCTTCGCGCACCGTGCCCCATTGGCGTTCGCT 285 | |||||||||| | | | || |||||| ||||| ||||||||||| || || || Sbjct 226 TGACCAGGCGTCGGCGTTGTCGGAGTAGTCCTCGCGGACCGTGCCCCACTGCCGGCCGGA 167 Query 286 CAGGTAGGGGCCCCACTCGCGCCAG 310 | |||||| |||||| |||||| Sbjct 166 GACGTAGGGCCCCCACAGACGCCAG 142 >seq115798 Length=539 Score = 86.0 bits (94), Expect = 1e-14 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 50 TCACCGTGGTTGCCCTCGGCGTTGTTCAGGCCGAACAGGCGCTCCTTGATGATTCCATCG 109 || ||||||||||||| | ||||| ||||| || || ||||| || | |||| |||| Sbjct 402 TCGCCGTGGTTGCCCTGGTGGTTGTCGAGGCCAAAGAGCCGCTCTTTCAAGATTTCATCC 461 Query 110 CGCTCGTTCCACAGGGCCAGGCCCAGGCACCAACGTTGCGCCTTGTCACTGAACCCCGCC 169 || ||||||| || | ||| | | |||| | | ||| | ||||| || || ||| Sbjct 462 TGCCCGTTCCAGAGCGTGAGGGCAAAGCACAACCTTTGGGTATTGTCGGAGATGCCAGCC 521 Query 170 AGGCCGTCCTCGCCCCA 186 |||||||| |||||||| Sbjct 522 AGGCCGTCTTCGCCCCA 538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1006653422880