Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_016654.1 Length=39474 Score E Sequences producing significant alignments: (Bits) Value seq115307 170 5e-38 seq109048 82.4 2e-11 >seq115307 Length=544 Score = 170 bits (188), Expect = 5e-38 Identities = 157/199 (79%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 12174 TGACACCCTGATCACCATCATCGGCAACCTGGTGGCGGACCCCGAGTTGCGGTTCACGCC 12233 ||| ||| | ||||| | ||||| ||||| | |||||||| |||| ||||| || Sbjct 200 TGAAACCGTCATCACGCTGATCGGGAACCTCACGAACGACCCCGAACTGCGCTTCACCCC 141 Query 12234 GGCCGGTGCTGCCGTCGCCAACTTCACCGTCGCGTCCACGCCGCGCACGTTCGACAAGCA 12293 | | ||||| || || ||||||||||| ||||| || || || |||||||||||| || Sbjct 140 GTCGGGTGCCGCGGTGGCCAACTTCACGGTCGCCTCGACTCCCCGCACGTTCGACCGTCA 81 Query 12294 GGCGAACGAGTGGAAGGACGGGGAGGCGCTGTTCATGCGCTGCCAGGTGTGGCGTGAGGC 12353 | ||||||||||||||||||| ||| ||||||||||||| ||| | | ||||| || || Sbjct 80 GTCGAACGAGTGGAAGGACGGCGAGACGCTGTTCATGCGTTGCGCGATCTGGCGCGAAGC 21 Query 12354 CGCCGAGAACGTCGCCGAG 12372 || ||||||||||||||| Sbjct 20 GGCGGAGAACGTCGCCGAG 2 >seq109048 Length=609 Score = 82.4 bits (90), Expect = 2e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 12411 GCTCAAGTCCCGCACCTTCGAGACGCGTGAGGGGGAGAAGCGGACCGTCATCGAACTGGA 12470 ||||||| ||| | |||||||| |||||||| |||||||| ||||||||||| || || Sbjct 603 GCTCAAGCAGCGCTCGTTCGAGACCCGTGAGGGCGAGAAGCGCACCGTCATCGAGCTCGA 544 Query 12471 GGTCGACGAGATCGGCCC 12488 ||||| ||| ||||||| Sbjct 543 CGTCGAGGAGGTCGGCCC 526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125995007799448