Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_016654.1
Length=39474
Score E
Sequences producing significant alignments: (Bits) Value
seq115307 170 5e-38
seq109048 82.4 2e-11
>seq115307
Length=544
Score = 170 bits (188), Expect = 5e-38
Identities = 157/199 (79%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 12174 TGACACCCTGATCACCATCATCGGCAACCTGGTGGCGGACCCCGAGTTGCGGTTCACGCC 12233
||| ||| | ||||| | ||||| ||||| | |||||||| |||| ||||| ||
Sbjct 200 TGAAACCGTCATCACGCTGATCGGGAACCTCACGAACGACCCCGAACTGCGCTTCACCCC 141
Query 12234 GGCCGGTGCTGCCGTCGCCAACTTCACCGTCGCGTCCACGCCGCGCACGTTCGACAAGCA 12293
| | ||||| || || ||||||||||| ||||| || || || |||||||||||| ||
Sbjct 140 GTCGGGTGCCGCGGTGGCCAACTTCACGGTCGCCTCGACTCCCCGCACGTTCGACCGTCA 81
Query 12294 GGCGAACGAGTGGAAGGACGGGGAGGCGCTGTTCATGCGCTGCCAGGTGTGGCGTGAGGC 12353
| ||||||||||||||||||| ||| ||||||||||||| ||| | | ||||| || ||
Sbjct 80 GTCGAACGAGTGGAAGGACGGCGAGACGCTGTTCATGCGTTGCGCGATCTGGCGCGAAGC 21
Query 12354 CGCCGAGAACGTCGCCGAG 12372
|| |||||||||||||||
Sbjct 20 GGCGGAGAACGTCGCCGAG 2
>seq109048
Length=609
Score = 82.4 bits (90), Expect = 2e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 12411 GCTCAAGTCCCGCACCTTCGAGACGCGTGAGGGGGAGAAGCGGACCGTCATCGAACTGGA 12470
||||||| ||| | |||||||| |||||||| |||||||| ||||||||||| || ||
Sbjct 603 GCTCAAGCAGCGCTCGTTCGAGACCCGTGAGGGCGAGAAGCGCACCGTCATCGAGCTCGA 544
Query 12471 GGTCGACGAGATCGGCCC 12488
||||| ||| |||||||
Sbjct 543 CGTCGAGGAGGTCGGCCC 526
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 125995007799448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |