Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_023503.1
Length=48800
Score E
Sequences producing significant alignments: (Bits) Value
seq100955 235 2e-57
>seq100955
Length=702
Score = 235 bits (260), Expect = 2e-57
Identities = 482/706 (68%), Gaps = 19/706 (3%)
Strand=Plus/Minus
Query 2158 GAATTTATGATTGTACCTGCTGGTGCACCAACATTCAAAGAAGCGCTTCGTTGGGGTGCT 2217
|||||||||||| | || | ||| ||||| |||| ||||| | || ||||| |
Sbjct 702 GAATTTATGATTATGCCGGTTGGCGCACCTTCATTTTCTGAAGCTTTGCGCTGGGGATCA 643
Query 2218 GAAATCTTCCACGCGCTTAAGAAAATCCTTAAAGAACGTGGACTTGAAACAGCCGTAGGT 2277
|| | || || || || |||||| | | || | || | | || || || |||
Sbjct 642 GAGGTGTTTCATAACCTGAAAAAAATCTTGCACGACAGAGGTTTGGTTACCGCTGTGGGT 583
Query 2278 GACGAAGGTGGTTTCGCACCT-CGTTTCGACGGAACTGAAGATGGTGTTGAAACTATCAT 2336
|| ||||| |||||||| || ||||| ||| | || |||||||| || ||||| || ||
Sbjct 582 GATGAAGGCGGTTTCGCTCCAACGTTT-GACAGTACCGAAGATGGCGTAGAAACCATTAT 524
Query 2337 CAAAGCTATCGAAGCTGCTGGATATGTACCAGGTAAAGACGTATTTATCGGACTT--GAC 2394
| |||| || ||| ||||| || | | ||| |||| |||||| | | ||| ||
Sbjct 523 CCAAGCCATAGAAAAAGCTGGTTACAAAGCTGGTGAAGA--TATTTACCTGGCTTTTGAT 466
Query 2395 TGTGCATCATCTGAATTCTACGATGCAGAACGTAAAGTTTACGACTACACTAAATTTGAA 2454
||||| |||| ||||| || || ||| | ||| ||||| ||||| |||||||||
Sbjct 465 TGTGCGGCATCCGAATTTTA---TGTAGACAGAAAA---TACGATTACACCAAATTTGAA 412
Query 2455 GGTGAAGGCGCTGCTGTTCGTACTGCTGCAGAACAAATCGACTACCTTGAAGAATTGGTT 2514
|| || | ||| | ||||| || || || | || ||||| | || |||
Sbjct 411 GGCGAGAAAGGTGCCATCCGTACCAGCGCCGAGCAGGTAGAATACCTGGCGCAACTGGCC 352
Query 2515 AACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGG 2574
| |||||||| || || ||||||| ||||| ||| ||||| | || |||||||| |||
Sbjct 351 GAAAAATACCCGATTATTTCTATCGAGGATGGCATGCACGAAGATGATTGGGACGGCTGG 292
Query 2575 AAATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTA 2634
||| || || ||||| || || | ||| | ||| |||||||||| || || || |||
Sbjct 291 AAAATGCTGACCGAACGCCTGGGCAGCAAAATCCAACTGGTTGGTGATGATTTGTTTGTA 232
Query 2635 ACTAACACTGCTTACC--TTG-AAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCTT 2691
|| |||||| | || ||| ||||||| || | |||| |||||||| |||||
Sbjct 231 ACGAACACTAC---CCGTTTGCAAAAAGGAATCGACCTGCACGTGGCTAACTCGATCCTG 175
Query 2692 AT-CAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAA 2750
| ||||| ||||| |||||| |||| || ||||| | ||||| | ||||| |
Sbjct 174 GTAAAAAGTAAACCAGATCGGTTCTTTAACCGAAACCATCAACGCTGTTACTTTGGCGCA 115
Query 2751 AGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAAT 2810
| ||| | || | || | |||||||| || ||||| |||||||| |||||
Sbjct 114 AACCAATGGTTTTACTTCGGTGATGAGCCACCGTTCCGGCGAAACAGAAGATTCTACAAT 55
Query 2811 CGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGT 2856
|| ||| | || ||||| || || |||||||| || |||
Sbjct 54 TGCGGATCTGGCGGTTGCTTTGAATTGCGGACAAATTAAAACCGGT 9
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 155790865460916
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |