Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq100955 235 2e-57 >seq100955 Length=702 Score = 235 bits (260), Expect = 2e-57 Identities = 482/706 (68%), Gaps = 19/706 (3%) Strand=Plus/Minus Query 2158 GAATTTATGATTGTACCTGCTGGTGCACCAACATTCAAAGAAGCGCTTCGTTGGGGTGCT 2217 |||||||||||| | || | ||| ||||| |||| ||||| | || ||||| | Sbjct 702 GAATTTATGATTATGCCGGTTGGCGCACCTTCATTTTCTGAAGCTTTGCGCTGGGGATCA 643 Query 2218 GAAATCTTCCACGCGCTTAAGAAAATCCTTAAAGAACGTGGACTTGAAACAGCCGTAGGT 2277 || | || || || || |||||| | | || | || | | || || || ||| Sbjct 642 GAGGTGTTTCATAACCTGAAAAAAATCTTGCACGACAGAGGTTTGGTTACCGCTGTGGGT 583 Query 2278 GACGAAGGTGGTTTCGCACCT-CGTTTCGACGGAACTGAAGATGGTGTTGAAACTATCAT 2336 || ||||| |||||||| || ||||| ||| | || |||||||| || ||||| || || Sbjct 582 GATGAAGGCGGTTTCGCTCCAACGTTT-GACAGTACCGAAGATGGCGTAGAAACCATTAT 524 Query 2337 CAAAGCTATCGAAGCTGCTGGATATGTACCAGGTAAAGACGTATTTATCGGACTT--GAC 2394 | |||| || ||| ||||| || | | ||| |||| |||||| | | ||| || Sbjct 523 CCAAGCCATAGAAAAAGCTGGTTACAAAGCTGGTGAAGA--TATTTACCTGGCTTTTGAT 466 Query 2395 TGTGCATCATCTGAATTCTACGATGCAGAACGTAAAGTTTACGACTACACTAAATTTGAA 2454 ||||| |||| ||||| || || ||| | ||| ||||| ||||| ||||||||| Sbjct 465 TGTGCGGCATCCGAATTTTA---TGTAGACAGAAAA---TACGATTACACCAAATTTGAA 412 Query 2455 GGTGAAGGCGCTGCTGTTCGTACTGCTGCAGAACAAATCGACTACCTTGAAGAATTGGTT 2514 || || | ||| | ||||| || || || | || ||||| | || ||| Sbjct 411 GGCGAGAAAGGTGCCATCCGTACCAGCGCCGAGCAGGTAGAATACCTGGCGCAACTGGCC 352 Query 2515 AACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGG 2574 | |||||||| || || ||||||| ||||| ||| ||||| | || |||||||| ||| Sbjct 351 GAAAAATACCCGATTATTTCTATCGAGGATGGCATGCACGAAGATGATTGGGACGGCTGG 292 Query 2575 AAATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTA 2634 ||| || || ||||| || || | ||| | ||| |||||||||| || || || ||| Sbjct 291 AAAATGCTGACCGAACGCCTGGGCAGCAAAATCCAACTGGTTGGTGATGATTTGTTTGTA 232 Query 2635 ACTAACACTGCTTACC--TTG-AAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCTT 2691 || |||||| | || ||| ||||||| || | |||| |||||||| ||||| Sbjct 231 ACGAACACTAC---CCGTTTGCAAAAAGGAATCGACCTGCACGTGGCTAACTCGATCCTG 175 Query 2692 AT-CAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAA 2750 | ||||| ||||| |||||| |||| || ||||| | ||||| | ||||| | Sbjct 174 GTAAAAAGTAAACCAGATCGGTTCTTTAACCGAAACCATCAACGCTGTTACTTTGGCGCA 115 Query 2751 AGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAAT 2810 | ||| | || | || | |||||||| || ||||| |||||||| ||||| Sbjct 114 AACCAATGGTTTTACTTCGGTGATGAGCCACCGTTCCGGCGAAACAGAAGATTCTACAAT 55 Query 2811 CGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGT 2856 || ||| | || ||||| || || |||||||| || ||| Sbjct 54 TGCGGATCTGGCGGTTGCTTTGAATTGCGGACAAATTAAAACCGGT 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155790865460916