Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_025730.1 Length=2229 Score E Sequences producing significant alignments: (Bits) Value seq37548 266 5e-68 >seq37548 Length=2359 Score = 266 bits (294), Expect = 5e-68 Identities = 356/490 (73%), Gaps = 15/490 (3%) Strand=Plus/Minus Query 1637 TTCTAGACAAATTGTTGCATACCCATTCGCGTAATTCCTCCACGCCTGATAGGTCAAACT 1696 ||| ||||||| | | | ||| |||||| | |||||||| ||||||| ||| ||| Sbjct 2129 TTCCAGACAAACTTTCACGTACGAATTCGCCGAGCTCCTCCACTCCTGATATGTCGAACA 2070 Query 1697 CGA-TCTC-AGGGGGACTCTCGTACGGAGCCACCACGGGACGATAGTGCCAGTCGGCGTA 1754 | | || | | |||| | |||| ||||||||| ||||||||||||||| ||| |||| Sbjct 2069 CAAATCCCGACGGGG--TGACGTATGGAGCCACCGTGGGACGATAGTGCCACTCGACGTA 2012 Query 1755 AGCTCGG-ACACTGTTAAAGTTGGTGAGGAGCGTTCGTGGAGCCAGCTCTCGAATAAGTC 1813 |||| | | |||||| ||||| ||||||||| || |||||||| |||| | | || Sbjct 2011 -GCTCCGCAAACTGTTGAAGTTTGTGAGGAGCACCCGAGGAGCCAGTGCTCGCACCAATC 1953 Query 1814 GCCAAAACTCATCAGGAGTTTCAGCGCCCACAATTCGATCCCACTGTGAACCAGCTCCAG 1873 ||||||||| |||| ||| || || |||||||||||||||| | | ||| || Sbjct 1952 CCCAAAACTCTTCAGCAGTCTCCGCATCCACAATTCGATCCCAGATTTCATTAGCGTGAG 1893 Query 1874 ATACATCCGTTCCGGGTCCCGTCCCTGGTCGTTCGAGTCCTCCACAGACAACATCTCCAT 1933 ||||| | ||| ||||||||| |||| || || |||||| || |||| Sbjct 1892 CCACATCAGCTCCA---------CCTGGTCGTCCGAGCCCCCCCGCGACAACGTCACCAT 1842 Query 1934 CCTTGATCGCATAATCCCAACCCTTGTAGGGTGTTCTTCCAAAAGGTTGAACGTTCGGGT 1993 | ||||| ||||| || | |||| ||||| | || |||| || | |||||||| Sbjct 1841 CTTTGATTGCATAGTCGTACATCTTGCCCGGTGTGCGGCCGCAAGGCTGTATGTTCGGGT 1782 Query 1994 GGTAGCCGTCAACATCGAAGCGTCGAGGGTCTGCTGTGTAGAACCGCTCTCCGAAATCGC 2053 | | |||||| ||||| || |||| ||||||| |||||||| || || || || Sbjct 1781 GATGGCCGTCCACATCAAATCGTCTGGGGTCTGAGGTGTAGAATCGACAACCAAAGTCAA 1722 Query 2054 AGAATGCGTGGAGATGAGTTCCCCCATCAGCGTGAGCCTCTCTGCCAATGATACACTCTG 2113 ||| |||||||||||| ||| |||||||| ||| ||||| |||||||||||||| | Sbjct 1721 CGAACGCGTGGAGATGAACTCCTCCATCAGCATGATTCTCTCGTCCAATGATACACTCAG 1662 Query 2114 CTGGTACCTC 2123 |||| ||||| Sbjct 1661 CTGGAACCTC 1652 Score = 125 bits (138), Expect = 1e-25 Identities = 179/251 (71%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 1230 TCATTACACAACCAAATTGTAGGCCTTCCCCAAATGACACTAGT---CTTTCCTCTGTAC 1286 ||||| || |||||||| || ||||| ||||| || | || ||| | |||| Sbjct 377 TCATTGCATAACCAAATAGTGGGCCTGCCCCACT---CAATCGTGAACTTATGGCGGTAC 321 Query 1287 TTGTCCGTAACTGTAAACTTGGACTGCGCCCCCAACCACCCCTTGTATGACGGGAAATAC 1346 ||||||| || || || | | |||||| ||||||||||| ||||| || || ||| || Sbjct 320 TTGTCCGACACCGTGAAAGTAGCCTGCGCACCCAACCACCCTTTGTAAGAAGGAAAAAAC 261 Query 1347 TTGAATCCGCCCTGCATATCATCAAATACTGCATAAAGGGCCTCTTCCACGTCACCTCGC 1406 || ||||| ||||||||||||||||| ||||||||| || || | || || || Sbjct 260 TTAAATCCACCCTGCATATCATCAAAGACTGCATAAGTCGCAGTCTCAAGATCGCCACGT 201 Query 1407 ATGTCGTCTACGTTGAACTGCAAACAGTTGTAGACGTGTCTGCCTAACGATCGGGCCCAT 1466 | ||| || | ||||||||| | ||| ||||| ||| ||| | ||||||||| Sbjct 200 ACGTCATCCAAGTTGAACTGTAGGCAGCAGTAGATATGTGGGCCGAGGCTTCGGGCCCAC 141 Query 1467 AGGGTCTTACC 1477 | ||||| || Sbjct 140 AAAGTCTTCCC 130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7014030252930