Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_025730.1
Length=2229
Score E
Sequences producing significant alignments: (Bits) Value
seq37548 266 5e-68
>seq37548
Length=2359
Score = 266 bits (294), Expect = 5e-68
Identities = 356/490 (73%), Gaps = 15/490 (3%)
Strand=Plus/Minus
Query 1637 TTCTAGACAAATTGTTGCATACCCATTCGCGTAATTCCTCCACGCCTGATAGGTCAAACT 1696
||| ||||||| | | | ||| |||||| | |||||||| ||||||| ||| |||
Sbjct 2129 TTCCAGACAAACTTTCACGTACGAATTCGCCGAGCTCCTCCACTCCTGATATGTCGAACA 2070
Query 1697 CGA-TCTC-AGGGGGACTCTCGTACGGAGCCACCACGGGACGATAGTGCCAGTCGGCGTA 1754
| | || | | |||| | |||| ||||||||| ||||||||||||||| ||| ||||
Sbjct 2069 CAAATCCCGACGGGG--TGACGTATGGAGCCACCGTGGGACGATAGTGCCACTCGACGTA 2012
Query 1755 AGCTCGG-ACACTGTTAAAGTTGGTGAGGAGCGTTCGTGGAGCCAGCTCTCGAATAAGTC 1813
|||| | | |||||| ||||| ||||||||| || |||||||| |||| | | ||
Sbjct 2011 -GCTCCGCAAACTGTTGAAGTTTGTGAGGAGCACCCGAGGAGCCAGTGCTCGCACCAATC 1953
Query 1814 GCCAAAACTCATCAGGAGTTTCAGCGCCCACAATTCGATCCCACTGTGAACCAGCTCCAG 1873
||||||||| |||| ||| || || |||||||||||||||| | | ||| ||
Sbjct 1952 CCCAAAACTCTTCAGCAGTCTCCGCATCCACAATTCGATCCCAGATTTCATTAGCGTGAG 1893
Query 1874 ATACATCCGTTCCGGGTCCCGTCCCTGGTCGTTCGAGTCCTCCACAGACAACATCTCCAT 1933
||||| | ||| ||||||||| |||| || || |||||| || ||||
Sbjct 1892 CCACATCAGCTCCA---------CCTGGTCGTCCGAGCCCCCCCGCGACAACGTCACCAT 1842
Query 1934 CCTTGATCGCATAATCCCAACCCTTGTAGGGTGTTCTTCCAAAAGGTTGAACGTTCGGGT 1993
| ||||| ||||| || | |||| ||||| | || |||| || | ||||||||
Sbjct 1841 CTTTGATTGCATAGTCGTACATCTTGCCCGGTGTGCGGCCGCAAGGCTGTATGTTCGGGT 1782
Query 1994 GGTAGCCGTCAACATCGAAGCGTCGAGGGTCTGCTGTGTAGAACCGCTCTCCGAAATCGC 2053
| | |||||| ||||| || |||| ||||||| |||||||| || || || ||
Sbjct 1781 GATGGCCGTCCACATCAAATCGTCTGGGGTCTGAGGTGTAGAATCGACAACCAAAGTCAA 1722
Query 2054 AGAATGCGTGGAGATGAGTTCCCCCATCAGCGTGAGCCTCTCTGCCAATGATACACTCTG 2113
||| |||||||||||| ||| |||||||| ||| ||||| |||||||||||||| |
Sbjct 1721 CGAACGCGTGGAGATGAACTCCTCCATCAGCATGATTCTCTCGTCCAATGATACACTCAG 1662
Query 2114 CTGGTACCTC 2123
|||| |||||
Sbjct 1661 CTGGAACCTC 1652
Score = 125 bits (138), Expect = 1e-25
Identities = 179/251 (71%), Gaps = 6/251 (2%)
Strand=Plus/Minus
Query 1230 TCATTACACAACCAAATTGTAGGCCTTCCCCAAATGACACTAGT---CTTTCCTCTGTAC 1286
||||| || |||||||| || ||||| ||||| || | || ||| | ||||
Sbjct 377 TCATTGCATAACCAAATAGTGGGCCTGCCCCACT---CAATCGTGAACTTATGGCGGTAC 321
Query 1287 TTGTCCGTAACTGTAAACTTGGACTGCGCCCCCAACCACCCCTTGTATGACGGGAAATAC 1346
||||||| || || || | | |||||| ||||||||||| ||||| || || ||| ||
Sbjct 320 TTGTCCGACACCGTGAAAGTAGCCTGCGCACCCAACCACCCTTTGTAAGAAGGAAAAAAC 261
Query 1347 TTGAATCCGCCCTGCATATCATCAAATACTGCATAAAGGGCCTCTTCCACGTCACCTCGC 1406
|| ||||| ||||||||||||||||| ||||||||| || || | || || ||
Sbjct 260 TTAAATCCACCCTGCATATCATCAAAGACTGCATAAGTCGCAGTCTCAAGATCGCCACGT 201
Query 1407 ATGTCGTCTACGTTGAACTGCAAACAGTTGTAGACGTGTCTGCCTAACGATCGGGCCCAT 1466
| ||| || | ||||||||| | ||| ||||| ||| ||| | |||||||||
Sbjct 200 ACGTCATCCAAGTTGAACTGTAGGCAGCAGTAGATATGTGGGCCGAGGCTTCGGGCCCAC 141
Query 1467 AGGGTCTTACC 1477
| ||||| ||
Sbjct 140 AAAGTCTTCCC 130
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7014030252930
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |