Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_025731.1 Length=2130 Score E Sequences producing significant alignments: (Bits) Value seq37548 120 4e-24 >seq37548 Length=2359 Score = 120 bits (132), Expect = 4e-24 Identities = 218/308 (71%), Gaps = 21/308 (7%) Strand=Plus/Minus Query 1702 CCCAAAACTCGTCACGAGTCTGTGCACCGACAATTGTAGCCCATTTCTGAGTAGTCTTAG 1761 |||||||||| ||| ||||| ||| | |||||| | |||| | | | ||| | || Sbjct 1952 CCCAAAACTCTTCAGCAGTCTCCGCATCCACAATTCGATCCCAGATTTCATTAGCGTGAG 1893 Query 1762 ATACTCCCAC-TCCGCCATCATCAGCGGGTCTGTCC-AGTCCTCCAGCAACAACATCCCC 1819 |||| || || || || | |||| |||| || || || || ||||| || || Sbjct 1892 ------CCACATCAGC--TC--CACCTGGTC-GTCCGAGCCCCCCCGCGACAACGTCACC 1844 Query 1820 ATCTTTGATTGCATAGTCGTA--TCC-GCCAGCTGGGCGTCCCCGAGATGGTTCAACATT 1876 ||||||||||||||||||||| || ||| | || ||| || | || || | || Sbjct 1843 ATCTTTGATTGCATAGTCGTACATCTTGCCCGGTGTGCGGCCGCAAGGCTGT---ATGTT 1787 Query 1877 CGGGTGGTGTCCTTGCACATCGAAGACGCGTACGTTCCGCGTACTAAATTTGACT-CCGA 1935 |||||| || || | |||||| || || | | || | | || | | ||| || | Sbjct 1786 CGGGTGATGGCCGTCCACATCAAAT-CGTCTGGGGTCTGAGGTGTAGAATCGACAACCAA 1728 Query 1936 AGTCGACGAAAGCATGGAGATGAATTCCTTCATCAGCGTGAGTCTCTCGTCCAATGATGC 1995 |||| ||||| || |||||||||| |||| ||||||| ||| |||||||||||||||| | Sbjct 1727 AGTCAACGAACGCGTGGAGATGAACTCCTCCATCAGCATGATTCTCTCGTCCAATGATAC 1668 Query 1996 ACTCTGCT 2003 |||| ||| Sbjct 1667 ACTCAGCT 1660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6697679913504