Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_025741.1 Length=2197 Score E Sequences producing significant alignments: (Bits) Value seq37548 91.5 2e-15 >seq37548 Length=2359 Score = 91.5 bits (100), Expect = 2e-15 Identities = 199/291 (68%), Gaps = 24/291 (8%) Strand=Plus/Minus Query 1861 CCCTCCCGCGACCACATCTCCATCTTTGATCGCATAGTCGAAACCGCCTT--CCGG---G 1915 ||| |||||||| || || ||||||||||| ||||||||| | | ||| |||| | Sbjct 1864 CCCCCCCGCGACAACGTCACCATCTTTGATTGCATAGTCGTA--CATCTTGCCCGGTGTG 1807 Query 1916 CTTCCGTAAGATGGAACAAGGTTCGGGTGGCGGCCTCCAACATCAAA-CACATCGGATC- 1973 | ||| ||| | | ||||||||| |||| | |||||||| | | || || Sbjct 1806 CGGCCGCAAGGCTGTAT---GTTCGGGTGATGGCCGTCCACATCAAATCGTCTGGGGTCT 1750 Query 1974 ---GTCTGGA-TCGA-AACCTCCGGGAGAAATCGACGAAAGCATGGAGATGAGTACCTCC 2028 || | || |||| |||| || || ||||| || ||||||||| ||||| Sbjct 1749 GAGGTGTAGAATCGACAACCA-------AAGTCAACGAACGCGTGGAGATGAACTCCTCC 1697 Query 2029 ATCAGCATGCAGTTCTCGTCCAATGATACACTCAGCACCAAGAAATGCCATATGGTCATT 2088 ||||||||| ||||||||||||||||||||||| || | || | ||| | Sbjct 1696 ATCAGCATGATTCTCTCGTCCAATGATACACTCAGCTGGAACCTCCGACAAAAAGTCGCT 1637 Query 2089 AACGGCCCATGCATCAAGATCGCCGCATTGCGCGTAGGTAAGGAGGGCATA 2139 ||| |||||| ||||| ||| || || | |||||| | ||| ||||| Sbjct 1636 GACGACCCATGGGTCAAGGCTGCCACACTGAGAGTAGGTGATGAGTGCATA 1586 Score = 89.7 bits (98), Expect = 7e-15 Identities = 230/345 (67%), Gaps = 9/345 (3%) Strand=Plus/Minus Query 683 TTCAAGGGAGCCCAAGGCCGGGATTGGAACAACCTTATTGTCGCCCCTGTGGACACATCC 742 || |||||||| |||| || ||| | | || ||||||||||| || || || | Sbjct 799 TTTAAGGGAGCAGAAGGTTACGACTGGTCCGATCTCATTGTCGCCCCCGTCGATACCACA 740 Query 743 CGAGTCACCCTCAAGTTTGATAAAACGTGGAC-CTATCGTAGCGGCAACGCCAACGGAAT 801 |||| ||| |||||||| ||||| ||||| ||| | | |||||||||||| || | Sbjct 739 AGAGTTGACCTTAAGTTTGACAAAACTTGGACTCTA-CATTCCGGCAACGCCAATGGTCT 681 Query 802 GGTGAAAGAGACCAAGCTTTTCCACCCGATGAATCAGACACTAGTGTATGATGACGACGA 861 || ||| | || || ||||| | ||| ||| || ||||||||||||||| Sbjct 680 AGTCCGAGAAAGGAAACTGTTCCATCGTATGGGAAAGAACCTGACGTATGATGACGACGA 621 Query 862 GAACGGTGATATAGAGCAAGAC---TCGTACTATTCTGTAGCCTCTAAGGCTGGAATGGG 918 ||| || ||| |||| || ||||| | ||| | |||| || ||||| Sbjct 620 AGTCGGCGAGCGCGAGTCAGACACGTCTTACTACACCGTAACTGATAAGCGGGGTATGGG 561 Query 919 TGACTATTACGTCATGGACTTTATTCAACCCGG--GTTAGGCGGCTCGGTGACGGATTTG 976 || |||||||| |||| |||||||| ||| | | || | | | ||| | Sbjct 560 AGATTATTACGTATTGGATATTATTCAATGCGGTACTGATGCAACAACAT--CCGATCTA 503 Query 977 CTAGCGATGCATTTTAATTCTACTATGTACTGGCACGAAAGATAG 1021 | ||| || ||||| ||||||||||||||||||| |||| Sbjct 502 TTGAGAATGACGTTCAATTCCACTATGTACTGGCACGAAAAATAG 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6911775597762