Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_026161.1 Length=2243 Score E Sequences producing significant alignments: (Bits) Value seq37548 197 2e-47 >seq37548 Length=2359 Score = 197 bits (218), Expect = 2e-47 Identities = 336/480 (70%), Gaps = 13/480 (3%) Strand=Plus/Minus Query 1719 GGGGTGTTCGTATGCAACCGTAGCGGGTCGATAGTGCCACTCGGCGTAGGCACGGAGCGA 1778 |||||| |||||| | || | ||| ||||||||||||||| ||||| || | | Sbjct 2058 GGGGTGA-CGTATGGAGCCACCGTGGGACGATAGTGCCACTCGACGTAGCTCCGCAA--A 2002 Query 1779 CTGGTG--GTTGCACAGAAGCGCTCGTGGTGCCAGCTCTCG-AGCAAGCTCCCAAAACTC 1835 ||| || ||| || ||| | || || ||||| |||| | ||| | |||||||||| Sbjct 2001 CTGTTGAAGTTTGTGAGGAGCACCCGAGGAGCCAGTGCTCGCACCAATC-CCCAAAACTC 1943 Query 1836 CTCCACACTTGCTGCATCTGCAATTCGAGCCCAGACGTTGTCAGCTCCCTGAACC---TC 1892 || || | | ||||| |||||||| |||||| | | ||| ||| || || Sbjct 1942 TTCAGCAGTCTCCGCATCCACAATTCGATCCCAGATTTCATTAGCG---TGAGCCACATC 1886 Query 1893 AGTTCCGACGGTGGGACTAAGCCCTCCTGCGACAACGTCTCCGTCCTTGATCGCATAGTC 1952 || ||| | | | | ||||| || ||||||||||| || || ||||| |||||||| Sbjct 1885 AGCTCCACCTGGTCGTCCGAGCCCCCCCGCGACAACGTCACCATCTTTGATTGCATAGTC 1826 Query 1953 GAGCATCTTTTGTGGTGTTCTACCACATGGTTGAATGTTCGGGTGGTAGCCTTCAACATC 2012 | |||||| ||||| | || || || || ||||||||||| | ||| || ||||| Sbjct 1825 GTACATCTTGCCCGGTGTGCGGCCGCAAGGCTGTATGTTCGGGTGATGGCCGTCCACATC 1766 Query 2013 AAAGCGTCGCGAGTCCCGGAGATTGATGCGTCGACCGAAATCCACGAAAGCGTGGAGATG 2072 ||| |||| | ||| | | || || | ||| || || ||||| ||||||||||| Sbjct 1765 AAATCGTCTGGGGTCTGAGGTGTAGAATCGACAACCAAAGTCAACGAACGCGTGGAGATG 1706 Query 2073 AATGCCCCCATCAGCGTGGTTCTCTCGACCAATGAGACACTCAGCTGGGTATGAAGTAAT 2132 || || |||||||| || |||||||| ||||||| |||||||||||| | | Sbjct 1705 AACTCCTCCATCAGCATGATTCTCTCGTCCAATGATACACTCAGCTGGAACCTCCGACAA 1646 Query 2133 AGAGTCGTGAACAGCCCATGGGTCCAGCTCTCCGCATTGAGAGTAAGTGAGGAGGACATA 2192 | ||||| || |||||||||| || || || |||||||| |||| ||| |||| Sbjct 1645 AAAGTCGCTGACGACCCATGGGTCAAGGCTGCCACACTGAGAGTAGGTGATGAGTGCATA 1586 Score = 111 bits (122), Expect = 2e-21 Identities = 184/258 (71%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 1209 GTCGTCATT-CATCAGCCAGATGGTGGGCCTCCCCCACTGCACCGTGGTTTTACCACGGT 1267 ||| ||||| ||| | ||| || |||||||| ||||||| | |||| ||| |||| Sbjct 381 GTCATCATTGCATAA-CCAAATAGTGGGCCTGCCCCACTCAATCGTGAACTTATGGCGGT 323 Query 1268 ATTTGTCCGTGACCGTGAATGTTGCCTGTCCCCCCAACCAACCCTTATACGCGGGAAAAA 1327 | ||||||| |||||||| || ||||| | |||||||| || || || | ||||||| Sbjct 322 ACTTGTCCGACACCGTGAAAGTAGCCTGCGCACCCAACCACCCTTTGTAAGAAGGAAAAA 263 Query 1328 ACTGGAAGTTCCCTTGTATATCGTCAAGCACAGCATACTTGGC-GTCTTCCAGCCCTGCC 1386 ||| || || || ||||| |||| || ||||| | || |||| | || | ||| Sbjct 262 ACTTAAATCCACCCTGCATATCATCAAAGACTGCATAAGTCGCAGTCT-CAAGATC-GCC 205 Query 1387 TTG-AGGTCATCCACATTCCACTGCAGGCAGCAGTATACATGTGGACCCAATGATCGCGC 1445 | | |||||||| || |||| ||||||||||| | |||||| || | ||| || Sbjct 204 ACGTACGTCATCCAAGTTGAACTGTAGGCAGCAGTAGATATGTGGGCCGAGGCTTCGGGC 145 Query 1446 CCAGACCGTCTTTCCAAG 1463 ||| | ||||| || || Sbjct 144 CCACAAAGTCTTCCCCAG 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7058766664566