Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_026169.1 Length=2249 Score E Sequences producing significant alignments: (Bits) Value seq37548 102 1e-18 >seq37548 Length=2359 Score = 102 bits (112), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 1894 GGTCTTTCGAGTCCCCCAGCCACAACGTCTCCATCTTTGATTGCATAATCAAACCCTTCT 1953 |||| | |||| ||||| || |||||||| ||||||||||||||||| || | | ||| Sbjct 1875 GGTCGTCCGAGCCCCCCCGCGACAACGTCACCATCTTTGATTGCATAGTCGTA--CATCT 1818 Query 1954 T--CTGGTGTTCCACGAGAAGGCGATACATTCGGGTGCTGTCCTTCAACATCGAATGCAC 2011 | | ||||| | | ||||| || |||||||| || || || ||||| ||| | Sbjct 1817 TGCCCGGTGTGCGGCCGCAAGGCTGTATGTTCGGGTGATGGCCGTCCACATCAAATCGTC 1758 Query 2012 GGGAGTTCCTG-GACCGATATTTGAC-TCCGAAGTCGACAAAAGCGTGCAGATGAATACC 2069 || || ||| | | | | ||| || ||||| || || ||||| ||||||| || Sbjct 1757 TGGGGT--CTGAGGTGTAGAATCGACAACCAAAGTCAACGAACGCGTGGAGATGAACTCC 1700 Query 2070 CCCATCTGCGTGATCCTCTCGGCCGATGATGCATTCAGCT 2109 ||||| || |||| |||||| || ||||| || |||||| Sbjct 1699 TCCATCAGCATGATTCTCTCGTCCAATGATACACTCAGCT 1660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7077939412410