Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_026817.1 Length=2235 Score E Sequences producing significant alignments: (Bits) Value seq37548 196 7e-47 >seq37548 Length=2359 Score = 196 bits (216), Expect = 7e-47 Identities = 336/481 (70%), Gaps = 15/481 (3%) Strand=Plus/Plus Query 61 TATGTCCTCATCACTTACGCTCAATGCGGAGAGCTGGACCCATGGGCTGTTCACGACTCT 120 |||| |||||||| ||| |||| || || || |||||||||| || ||||| | Sbjct 1586 TATGCACTCATCACCTACTCTCAGTGTGGCAGCCTTGACCCATGGGTCGTCAGCGACTTT 1645 Query 121 ATTACTTCATACCCAGCTGAGTGTCTCATTGGTCGAGAGAACCACGCTGATGGGGGCATT 180 | | |||||||||||| ||||||| |||||||| || |||||||| || || Sbjct 1646 TTGTCGGAGGTTCCAGCTGAGTGTATCATTGGACGAGAGAATCATGCTGATGGAGGAGTT 1705 Query 181 CATCTCCACGCTTTCGTGGATTTCGGTCGACGCATC--AATCTCAGGGACCCGCGACGCT 238 ||||||||||| ||||| || || ||| | || || | |||| ||||| |||| | Sbjct 1706 CATCTCCACGCGTTCGTTGACTTTGGTTGTCGATTCTACACCTCA--GACCCCAGACGAT 1763 Query 239 TCGATGTTGACGACCGCCACCCGAACATTCAACCATGTGGTAGAACACCACAAAAGATGC 298 | ||||| |||| || ||||||||||| || || || || | ||||| |||||| Sbjct 1764 TTGATGTGGACGGCCATCACCCGAACATACAGCCTTGCGGCCGCACACCGGGCAAGATGT 1823 Query 299 TCGACTATGCGATCAAGGACGGAGACGTTGTCGCAGGAGGGCTC--AGTACCAGAATCGG 356 ||||||||| ||||| || || ||||||||||| || |||||| | ||||| || Sbjct 1824 ACGACTATGCAATCAAAGATGGTGACGTTGTCGCGGGGGGGCTCGGACGACCAG--GTGG 1881 Query 357 AACTGAAAT---TCAGGGAACTGACAACGTCTGGTCTCGAATTGCAGATGCAGCAAGTGT 413 | |||| | ||| | | ||| | ||||| |||||||| ||||| | | || Sbjct 1882 AGCTGATGTGGCTCACGCTAATGAAA---TCTGGGATCGAATTGTGGATGCGGAGACTGC 1938 Query 414 GGAGGAGTTTTGGGAGCTTGTTCGAGAGCTGGCACCACGAGCGCTTTTATGCAACCACCA 473 || |||||||||| | || |||| ||||| || || | ||| | ||| | | Sbjct 1939 TGAAGAGTTTTGGGGATTGGTGCGAGCACTGGCTCCTCGGGTGCTCCTCACAAACTTCAA 1998 Query 474 ATCTCTCCGTGCCTACGCCGAGTGGCACTATCGACCCCCTGCGGTTGCATACGAACACCC 533 | | || ||||| ||||||||||||||| ||| | | || | |||||| ||||| Sbjct 1999 CAGTTTGCGGAGCTACGTCGAGTGGCACTATCGTCCCACGGTGGCTCCATACG-TCACCC 2057 Query 534 C 534 | Sbjct 2058 C 2058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7033203000774