Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_026818.1 Length=2199 Score E Sequences producing significant alignments: (Bits) Value seq37548 77.0 4e-11 >seq37548 Length=2359 Score = 77.0 bits (84), Expect = 4e-11 Identities = 195/287 (68%), Gaps = 10/287 (3%) Strand=Plus/Minus Query 1856 CTGGTCGTTCCAGTCCCCCTGCCACAATGTCACCATCTTTGCACGCATAGTCGAAGCCCT 1915 |||||||| | || ||||| || |||| ||||||||||||| ||||||||| | || Sbjct 1877 CTGGTCGTCCGAGCCCCCCCGCGACAACGTCACCATCTTTGATTGCATAGTCGTACATCT 1818 Query 1916 CACGTGGTGTAGAGTGCGTA--GCTGAAACATTTGGGTGATGATTGTCGACATCAAAGAT 1973 | ||||| | | || | |||| | || |||||||| ||| |||||||| Sbjct 1817 TGCCCGGTGT-GCGGCCGCAAGGCTG-TATGTTCGGGTGATGGCCGTCCACATCAAATCG 1760 Query 1974 GCTGGTACGAC-GAGATCT-GAATTTCCTGCCGAAGTCGACAAAAGCGTGTAGATGAGTT 2031 |||| | | ||| | | |||| | || ||||| || || ||||| |||||| | Sbjct 1759 TCTGG--GGTCTGAGGTGTAGAATCGACAACCAAAGTCAACGAACGCGTGGAGATGAACT 1702 Query 2032 CCACCATCAGCATGGGCTTCTCGTGCGACGATGCATTCTCCTCGAA-GTTCTCCAAGGTG 2090 || ||||||||||| |||||| | | ||| || || || ||| | | ||| | Sbjct 1701 CCTCCATCAGCATGATTCTCTCGTCCAATGATACACTCAGCTGGAACCTCCGACAAAAAG 1642 Query 2091 ATTGCTAACTTTCCAGGGGTCGAGTTCCCCGCACTGAGAATAGGTGA 2137 | ||| || ||| ||||| || || |||||||| ||||||| Sbjct 1641 -TCGCTGACGACCCATGGGTCAAGGCTGCCACACTGAGAGTAGGTGA 1596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6918166513710