Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_027820.1 Length=2253 Score E Sequences producing significant alignments: (Bits) Value seq37548 96.9 5e-17 >seq37548 Length=2359 Score = 96.9 bits (106), Expect = 5e-17 Identities = 153/210 (73%), Gaps = 12/210 (6%) Strand=Plus/Minus Query 1918 CCCCCCTGCAACAACGTCTCCATCTTTGATCGCATAGTCGTAACCGCATTCCGGA----C 1973 |||||| || |||||||| ||||||||||| ||||||||||| | | | || | | Sbjct 1864 CCCCCCCGCGACAACGTCACCATCTTTGATTGCATAGTCGTA-CATCTTGCCCGGTGTGC 1806 Query 1974 GACCTCTAGATGGTGTAATGTTTGGGTGGTGGCCTCCGACATCaaaaaaa-TCGGATC-G 2031 | || | || | |||| |||| ||||| ||||| | |||||||| | || || | Sbjct 1805 GGCCGCAAG--GCTGTA-TGTTCGGGTGATGGCCGTCCACATCAAATCGTCTGGGGTCTG 1749 Query 2032 TCGTGATTGTTTCTTTCTTCCAAAATCGACGAAAACATGGAGATGAGTACCTCCATCAGC 2091 ||| | | || | ||||| || ||||| | ||||||||| ||||||||||| Sbjct 1748 AGGTG-TAGAATCGA-CAACCAAAGTCAACGAACGCGTGGAGATGAACTCCTCCATCAGC 1691 Query 2092 GTGATCCTCTCGTCCAATGATACACTCCGC 2121 |||| ||||||||||||||||||||| || Sbjct 1690 ATGATTCTCTCGTCCAATGATACACTCAGC 1661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7090721244306