Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_027821.1 Length=2188 Score E Sequences producing significant alignments: (Bits) Value seq37548 93.3 6e-16 >seq37548 Length=2359 Score = 93.3 bits (102), Expect = 6e-16 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 1758 GGCCGTTCGAGTCCTCCTGCGACCACATCGCCATCCTTGATCCCGTAGTCGTAGCCCTTC 1817 || ||| |||| || || ||||| || || ||||| ||||| | |||||||| ||| Sbjct 1875 GGTCGTCCGAGCCCCCCCGCGACAACGTCACCATCTTTGATTGCATAGTCGTACATCTTG 1816 Query 1818 TCTGGAGTCCCTCCAGACTTCTGTATGTTAGGGTGGCGGCCTCCCACATCGAAAACATCA 1877 | || || | || | ||||||||| ||||| |||| ||||||| ||| | || Sbjct 1815 CCCGGTGTGCGGCCGCAAGGCTGTATGTTCGGGTGATGGCCGTCCACATC-AAATCGTCT 1757 Query 1878 GCCTTTCGAC-TGCCGAACTGTCTGCCGAAATCGACGAGAGCGTGGAAGTGAATTCCCCC 1936 | | || || ||| | | || || || |||| ||||||| |||| ||| || Sbjct 1756 GGGGTCTGAGGTGTAGAATCGACAACCAAAGTCAACGAACGCGTGGAGATGAACTCCTCC 1697 Query 1937 ATCAGCGTGAGACTCTCTTCCAACGGTACACTCAGCTCGA 1976 |||||| ||| ||||| ||||| | ||||||||||| || Sbjct 1696 ATCAGCATGATTCTCTCGTCCAATGATACACTCAGCTGGA 1657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6883016475996