Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq59967 95.1 5e-14 >seq59967 Length=1670 Score = 95.1 bits (104), Expect = 5e-14 Identities = 193/285 (68%), Gaps = 4/285 (1%) Strand=Plus/Plus Query 88977 AAGTTCACCGCCGTGGGCCGAGAGTGCAGGGACAAGGCCGTGGTCGTGGTGGACGACTCT 89036 ||| | | |||| ||||| |||| || || |||| | | || | || |||||||| Sbjct 1220 AAGCTGAACGCCCTGGGCACGGAGTTCAAGGGCAAGAACATCCTCATCGTCGACGACTCG 1279 Query 89037 GTCGTGCGCGGCACCACATCCAAGTTCATAATCGACCTCCTTCGCAAGTCTGGCGCCACC 89096 ||||||||||||| || |||| || ||||| | ||| | | || || | | Sbjct 1280 ATCGTGCGCGGCACGACGAGCAAGGAGATCGTCGACATGGCCCGCGCGGCCGGAGCGAAC 1339 Query 89097 AAGGTCTACCTCGCTTCTTGCTCTCCCCCGATCCGTTACCCCAACGTGTACGGCATCGAC 89156 ||||| |||| || | |||| ||| |||| ||||| |||||||||| ||| || Sbjct 1340 AAGGTGACGTTCGCCTCCGCCGCTCCGCCGGTCCGCTACCCGCACGTGTACGGTATCAAC 1399 Query 89157 ATACC--GTCGGCCAAGGAGCTCATTGCTTCTGGTCGCACCGAGCACGAGGTGGCTCTCC 89214 || || | |||| ||||||||| || || || || | | |||| | || | | Sbjct 1400 ATGCCGAGCCGGC--GGGAGCTCATCGCGTCGGGCCGGAAGATCCCCGAGATCGCCCGCG 1457 Query 89215 TCCTCGGAGCCGACCAGGTCATCTATCAGAGTGTCGACGACTTGC 89259 ||||| |||||||| | ||||| ||| ||||||||| ||| Sbjct 1458 AGCTCGGGGCCGACCACCTGATCTACCAGGAGGTCGACGACATGC 1502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2081083910797022