Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_030138.1 Length=2194 Score E Sequences producing significant alignments: (Bits) Value seq37548 192 8e-46 >seq37548 Length=2359 Score = 192 bits (212), Expect = 8e-46 Identities = 384/557 (69%), Gaps = 18/557 (3%) Strand=Plus/Minus Query 1552 CTACTTCCAGACAAGTTGTCACGTACCCATTCGTCAAGTTGCGGCACG--TGATCTGTGC 1609 || ||||||||||| | |||||||| ||||| | || | | ||| |||| ||| | Sbjct 2133 CTTCTTCCAGACAAACTTTCACGTACGAATTCGCCGAGCTCCTCCACTCCTGATATGT-C 2075 Query 1610 GGAGTAAAAGTCCGTGTGGGTGTTCGTATCGAGTAGCCACGGGTCGATAGTGCCATTCTG 1669 | | ||| ||| ||||| ||||| ||| || ||| ||||||||||| || Sbjct 2074 GAACACAAATCCCGACGGGGTGA-CGTATGGAGCCACCGTGGGACGATAGTGCCACTCGA 2016 Query 1670 CATAAGCTC-GTAGGGATTGGTGA--TTGCACAGAAGCGCTCTCGGTGCCAGCTCTCGAG 1726 | || |||| | | | || ||| || || ||| | | || ||||| |||| Sbjct 2015 CGTA-GCTCCGCAA--ACTGTTGAAGTTTGTGAGGAGCACCCGAGGAGCCAGTGCTCGCA 1959 Query 1727 TAATTGCCCAAAACTCGTCAACACTTGGCGCATTTGCAATTCGATGCCAGATAGAATCAG 1786 | | |||||||||| ||| || | ||||| ||||||||| |||||| || || Sbjct 1958 CCAATCCCCAAAACTCTTCAGCAGTCTCCGCATCCACAATTCGATCCCAGATTTCATTAG 1899 Query 1787 TCT---CCGCATCTGAAACGTCGAGTATGGGGTTGAGcccccccGCAACAACGTCTCCGT 1843 | || |||| | | | || | |||||||||||| |||||||| || | Sbjct 1898 CGTGAGCCACATCAGCTCCACCTGGTC---GTCCGAGCCCCCCCGCGACAACGTCACCAT 1842 Query 1844 CCTTGATCGCATAGTCGAGCATCTTCTGCGGTGTTCGACCGCATGGTGCAATGTTCGGGT 1903 | ||||| ||||||||| |||||| |||||| || ||||| || |||||||||| Sbjct 1841 CTTTGATTGCATAGTCGTACATCTTGCCCGGTGTGCGGCCGCAAGGCTGTATGTTCGGGT 1782 Query 1904 GGAAACCCCCAACATCGAATCGTCGATTGTCTCGGATGTCAACTCGTTTCCCGAAATCAA 1963 | || | ||||| ||||||| |||| | ||| | ||| || || |||| Sbjct 1781 GATGGCCGTCCACATCAAATCGTCTGGGGTCTGAGGTGTAGAATCGACAACCAAAGTCAA 1722 Query 1964 CGAAAGCGTGGAGGTGAATGCCTCCATCAGCGTGATTCTCTCGTCCAATGATACACTCCG 2023 |||| |||||||| |||| ||||||||||| |||||||||||||||||||||||||| | Sbjct 1721 CGAACGCGTGGAGATGAACTCCTCCATCAGCATGATTCTCTCGTCCAATGATACACTCAG 1662 Query 2024 CTGGAAAC-GCGACAACATGGTTGTGGACCAGCCATGGATCCAGGTCTCCGCATTGGGCG 2082 |||||| | |||||| | || | ||| | |||||| || ||| || || || | | Sbjct 1661 CTGGAACCTCCGACAA-AAAGTCGCTGACGACCCATGGGTCAAGGCTGCCACACTGAGAG 1603 Query 2083 TACGTGAGGAGGACATA 2099 || |||| ||| |||| Sbjct 1602 TAGGTGATGAGTGCATA 1586 Score = 86.0 bits (94), Expect = 9e-14 Identities = 180/260 (69%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 1111 GTCCTCGTT-CATAAGCCAGATAGTGGGGCGCCCCCACTGGATGGTTGTCTTCCCTCGGT 1169 ||| || || ||||| ||| |||||||| | ||||||| || || ||| |||| Sbjct 381 GTCATCATTGCATAA-CCAAATAGTGGGCCTGCCCCACTCAATCGTGAACTTATGGCGGT 323 Query 1170 ATTTGTCGGTGACGGTGAATGTTTGTTGTGCACCTAGCCACCCTTTGTAGGAAGGAAAGA 1229 | ||||| | || ||||| || || ||||| | |||||||||||| |||||||| | Sbjct 322 ACTTGTCCGACACCGTGAAAGTAGCCTGCGCACCCAACCACCCTTTGTAAGAAGGAAAAA 263 Query 1230 ATTGGAAGTTTCCTTGCATATCGTCAAGCACTGCATACTTGGC-GTCTTCCAAACCAGCC 1288 | | || || |||||||| |||| |||||||| | || |||| ||| ||| Sbjct 262 ACTTAAATCCACCCTGCATATCATCAAAGACTGCATAAGTCGCAGTCT--CAAGATCGCC 205 Query 1289 TTG-AAGTCGTCCACATTGCCTTGCAGGCAGCA--ATATATGTGGGCACCCAGTGATCGT 1345 | | ||| |||| ||| || |||||||| | ||||||||| || || ||| Sbjct 204 ACGTACGTCATCCAAGTTGAACTGTAGGCAGCAGTAGATATGTGGG--CCGAGGCTTCGG 147 Query 1346 GCCCAAATTGTCTTGCCTAG 1365 ||||| | ||||| || || Sbjct 146 GCCCACAAAGTCTTCCCCAG 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6902189223840