Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_030147.1 Length=2226 Score E Sequences producing significant alignments: (Bits) Value seq37548 156 6e-35 >seq37548 Length=2359 Score = 156 bits (172), Expect = 6e-35 Identities = 308/447 (69%), Gaps = 8/447 (2%) Strand=Plus/Minus Query 1679 CGGGGGTCGATAATGCCACTCCGCATACGCTCGGAGGGACTGATG--GTTGCATAGAAGC 1736 || ||| ||||| |||||||| | || |||| | |||| || ||| || ||| Sbjct 2038 CGTGGGACGATAGTGCCACTCGACGTA-GCTCCGCAA-ACTGTTGAAGTTTGTGAGGAGC 1981 Query 1737 GCTCGCGGTGCCAGCTCTCGAGTAATTACCCAAAACTCGTCAACAGTCGCTGCATTTGCA 1796 | || || ||||| |||| | | |||||||||| ||| ||||| | |||| || Sbjct 1980 ACCCGAGGAGCCAGTGCTCGCACCAATCCCCAAAACTCTTCAGCAGTCTCCGCATCCACA 1921 Query 1797 ATTCGATGCCAGACAGTGTCAGC-TGACGATACTTCATCTCCGAGTACGGGATCGAGTCC 1855 ||||||| ||||| | ||| ||| | || ||| |||| | | |||| || Sbjct 1920 ATTCGATCCCAGATTTCATTAGCGTGA-GCCACATCAGCTCCACCTGGTCGTCCGAGCCC 1862 Query 1856 GCCAGCCACAACGTCTCCGTCCTTGACCGCATAGTCGAGCATCTTTTGAGGTGTTCTTCC 1915 || || |||||||| || || |||| ||||||||| |||||| ||||| | || Sbjct 1861 CCCCGCGACAACGTCACCATCTTTGATTGCATAGTCGTACATCTTGCCCGGTGTGCGGCC 1802 Query 1916 GCATGGCGTAATGTTCGGGTGCTGGCCGTTAACATCAAAGAGTCGACTGTCTCTGATGT- 1974 ||| ||| ||||||||||| ||||||| |||||||| ||| |||| | ||| Sbjct 1801 GCAAGGCTGTATGTTCGGGTGATGGCCGTCCACATCAAATCGTCTGGGGTCTGAGGTGTA 1742 Query 1975 CAGTCTTCTTTCCAAGATCCACGAAAGCGTGGAGGTGAATGCCTCCATCCACGTGATTTT 2034 | || | |||| || ||||| |||||||| |||| |||||||| | ||||| | Sbjct 1741 GAATCGAC-AACCAAAGTCAACGAACGCGTGGAGATGAACTCCTCCATCAGCATGATTCT 1683 Query 2035 CTCGTCCAATGAGACACTCAGCGTGAAGTGATGCAAGATGGTCGCAGACCATCCAGGGAT 2094 |||||||||||| ||||||||| ||| | | | ||||| ||| | ||| || | Sbjct 1682 CTCGTCCAATGATACACTCAGCTGGAACCTCCGACAAAAAGTCGCTGACGACCCATGGGT 1623 Query 2095 CCAGGTCGCCGCATTGGGAGTATGTGA 2121 | ||| ||| || || ||||| |||| Sbjct 1622 CAAGGCTGCCACACTGAGAGTAGGTGA 1596 Score = 111 bits (122), Expect = 2e-21 Identities = 181/257 (70%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 1140 GTCGTCATTGGTCAACCAGATTGACGGCCTGCCCCAGTTGATTGTTGTCTTGCCCTTGTA 1199 ||| |||||| ||||| || | ||||||||||| | || || ||| ||| Sbjct 381 GTCATCATTGCATAACCAAATAGTGGGCCTGCCCCACTCAATCGTGAACTTATGGCGGTA 322 Query 1200 CTTGTCAGTGACCGTGAATTGATGCTGCGCACCCAGCCACCCCTTGTACGAAGGGAAGAA 1259 |||||| | |||||||| | ||||||||||| |||||| ||||| ||||| || || Sbjct 321 CTTGTCCGACACCGTGAAAGTAGCCTGCGCACCCAACCACCCTTTGTAAGAAGGAAAAAA 262 Query 1260 CTGAAAGTTTCCCTGTATGTCATCGAAGATGGCAT-ATTGGGCCTCTTGCAGGTTTGCC- 1317 || ||| ||||| || ||||| |||| |||| | | | ||| || | | ||| Sbjct 261 CTTAAATCCACCCTGCATATCATCAAAGACTGCATAAGTCGCAGTCT--CAAGATCGCCA 204 Query 1318 CTCACATCGTCCACGTTGAACTGCATGCAGCAGTAGATGTGTTGGCCCAATGAACGGGCC 1377 | || || |||| ||||||||| | |||||||||||| ||| |||| | |||||| Sbjct 203 CGTACGTCATCCAAGTTGAACTGTAGGCAGCAGTAGATATGTGGGCCGAGGCTTCGGGCC 144 Query 1378 CAGATGGTCTTTCCAAG 1394 || | ||||| || || Sbjct 143 CACAAAGTCTTCCCCAG 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7004443879008