Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq96741 93.3 6e-14 seq37864 91.5 2e-13 seq86661 87.8 2e-12 seq73006 84.2 3e-11 >seq96741 Length=757 Score = 93.3 bits (102), Expect = 6e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 142790 TTCGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCG 142849 ||||||| ||||||||| ||| |||||||||||||||||||||||||||| ||||||| Sbjct 468 TTCGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCAAGCAGGATGTCGTCGGTTCG 409 Query 142850 AGTCCGTTATTCTCCACCA 142868 | |||| | |||||||| Sbjct 408 ATCCCGTCAGGCTCCACCA 390 >seq37864 Length=2509 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142792 CGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 ||||| ||||||||||||||||||| ||||||||||||||||| |||| |||||||| Sbjct 184 CGGGGGCTTAGCTCAGTTGGTAGAGCACCTGCTTTGCAAGCAGGGGGTCAGGGGTTCGAG 125 Query 142852 TCCGTTATTCTCCAC 142866 ||| || ||||||| Sbjct 124 TCCCCTAGTCTCCAC 110 >seq86661 Length=905 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142793 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGT 142852 |||| |||||||||| ||| ||||| ||||||||||||||||| ||| |||||||| Sbjct 734 GGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCGTCGGTTCGATC 675 Query 142853 CCGTTATTCTCCACCAAC 142870 |||| || |||||||||| Sbjct 674 CCGTCATCCTCCACCAAC 657 >seq73006 Length=1194 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 142793 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGT 142852 |||| |||||||||| ||| ||||| ||||||||||||||||| ||| |||||||| Sbjct 248 GGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCGTCGGTTCGATC 307 Query 142853 CCGTTATTCTCCACCA 142868 |||| || |||||||| Sbjct 308 CCGTCATCCTCCACCA 323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690304558211640