Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq70715 89.7 5e-16 seq79057 87.8 2e-15 seq65514 86.0 6e-15 seq61105 86.0 6e-15 seq68957 84.2 2e-14 seq76149 78.8 9e-13 seq64349 78.8 9e-13 seq52572 78.8 9e-13 seq52111 78.8 9e-13 seq50859 77.0 3e-12 >seq70715 Length=50332 Score = 89.7 bits (98), Expect = 5e-16 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 49 TCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAA 108 ||| || ||||||||| |||||||||||| |||||||||| ||||||||| || || Sbjct 26288 TCGCAGTAACCAGGCCGGGGCGACTGTTTATAAAAAACACAGGTCTCTGCAAAGTCGTAA 26347 Query 109 GTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 | | |||||||| | |||||| ||| || ||||||||| || Sbjct 26348 GACCATGTATAGGGGCTAACGCCTACCCAGTACCGGAAGGTCAA 26391 >seq79057 Length=1906 Score = 87.8 bits (96), Expect = 2e-15 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||||| ||||||||||| |||||||||| ||| ||||| || ||| | || Sbjct 1901 ACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGTAAGACCATGT 1842 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||| |||||||||||| |||||||||||| || Sbjct 1841 ATAGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 1806 >seq65514 Length=43848 Score = 86.0 bits (94), Expect = 6e-15 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | |||||||||||||||||||| || ||||||| || | || || Sbjct 7853 ATACCAGGGGGTAGCGACTGTTTATTAAAAACATAGAACTCTGCTAAGTGGTAACACGAT 7912 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || |||| |||||||||||| ||||||| Sbjct 7913 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 7947 >seq61105 Length=1314 Score = 86.0 bits (94), Expect = 6e-15 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||||||||||| ||||||| || | || || Sbjct 808 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTAGTAACACGAT 749 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || |||| |||||||||| | ||||||| Sbjct 748 GTATAGAGTCTGACACCTGCCCGGTACTGGAAGGT 714 >seq68957 Length=25438 Score = 84.2 bits (92), Expect = 2e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| ||||| |||| ||| |||| || Sbjct 692 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAATACAGGTCTCCTCAAAGTCGT 633 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||||||| |||||||||||| |||||||||||| || Sbjct 632 AAGACTATGTATAGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 587 >seq76149 Length=88024 Score = 78.8 bits (86), Expect = 9e-13 Identities = 75/96 (78%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||||| ||||||||||| ||||| |||| ||| ||||| || ||| | || Sbjct 41056 ACCAGGCCCGAGCGACTGTTTACCAAAAATACAGGTCTCCGCAAAGTCGTAAGACCATGT 40997 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 || ||| |||||||||||| |||||||||||| || Sbjct 40996 ATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 40961 >seq64349 Length=7991 Score = 78.8 bits (86), Expect = 9e-13 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || ||||||||| || |||||||| ||||| ||| ||| ||||| || Sbjct 2727 GGTCGCAGTGACCAGGCCGGGGCAACTGTTTACCAAAAATACAAGTCTCCGCAAAGTCGT 2786 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 2787 AAGACCAAGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 2832 >seq52572 Length=661 Score = 78.8 bits (86), Expect = 9e-13 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || || ||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 298 GGTCGCAGTGACGAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 239 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||| ||| |||||||||||| || Sbjct 238 AAGATAATGTATGGGGGCTGACGCCTACCCAGTGCCGGAAGGTCAA 193 >seq52111 Length=1503 Score = 78.8 bits (86), Expect = 9e-13 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| |||||||||| |||||||||| ||| ||||| || Sbjct 104 GGTCGCAGTGACCAGGCCCGGACGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 163 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| ||||| |||||| |||||||||||| || Sbjct 164 AAGACCATGTATGGGGGCTGACGTCTGCCCAGTGCCGGAAGGTCAA 209 >seq50859 Length=2997 Score = 77.0 bits (84), Expect = 3e-12 Identities = 74/95 (78%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | || ||| |||||||||||||||| ||||||| || | || || Sbjct 425 ATACCAGGGGGTAGCAACTATTTATTAAAAACACAGGACTCTGCTAAGTGGTAACATGAT 366 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || ||| |||||||||||| ||||||| Sbjct 365 GTATAGAGTCTGATACCTGCCCGGTGCTGGAAGGT 331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476433704062