Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq29494 145 1e-32 seq63204 140 5e-31 seq47321 118 2e-24 seq62995 113 7e-23 seq76382 111 3e-22 seq25056 95.1 2e-17 seq78701 91.5 2e-16 seq53782 91.5 2e-16 seq48903 91.5 2e-16 seq58508 87.8 3e-15 seq75293 78.8 2e-12 seq51091 78.8 2e-12 seq69644 77.0 5e-12 seq16188 77.0 5e-12 seq65714 73.4 7e-11 >seq29494 Length=886 Score = 145 bits (160), Expect = 1e-32 Identities = 203/285 (71%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| || ||||| | Sbjct 448 GCTTTCGTCTCTCAGTGTCAGTATCGGCCCAGCAGAGTGCTTTCGCCGTTGTTGTTCTTT 507 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| ||||| |||| | | | |||| || Sbjct 508 CCGATCTCTACGCATTTCACCGCTCCACCGAAAATTCTCTCTGCCCTTACCGTACTCCAG 567 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | ||| | ||||| ||||| | ||| || | ||||| Sbjct 568 CTTGGTAGTTTCCACTGCCTGTCCAGGGTTAAGCCCTGGGATTTGACGGCGGACTTAAAA 627 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||| Sbjct 628 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 687 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 688 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 732 >seq63204 Length=2691 Score = 140 bits (154), Expect = 5e-31 Identities = 202/285 (71%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 |||||||| ||||| |||| | | | |||||| || ||||||| |||||||| | Sbjct 837 GCTTTCGCCTCTCAGTGTCATTGTCGGCCCAGCAGATTGCTTTCGCCATTGGTGTTCTTT 896 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| | | || | | |||| || Sbjct 897 CCAATCTCTACGCATTTCACCGCTCCACCAGAAATTCCCTCTATCCCTACCGTACTCCAG 956 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | ||||| Sbjct 957 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCAGACTTAAAA 1016 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | ||||||| ||| |||| |||| |||||| Sbjct 1017 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATGACGTTTGCATCCTATGTATTA 1076 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| |||||||||||| | ||||| | ||||||||| ||| || Sbjct 1077 CCGTGGCTGCTGGCACAGAATTAGCTGATGCTTATTCCCCAGATA 1121 >seq47321 Length=647 Score = 118 bits (130), Expect = 2e-24 Identities = 197/285 (69%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| ||||| | | |||||| || ||| || |||||||| | Sbjct 508 GCTTTCGTCTCTCAGTTTCAGTGTCGGCCCAGCAGAGTGCTTTCCCCGTTGGTGTTCTTT 449 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| || | |||||| ||| || | | |||| || Sbjct 448 CCGATCTCTACGCATTTCACCGCTCCATCGGAAATTCCCTCAGCCCCTACCGTACTCCAG 389 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 | |||||| | || | ||||||||||| | ||| || ||||| Sbjct 388 CATGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGTGGACTTAAAA 329 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| |||||| |||||| | || ||||||||||||| || |||||| Sbjct 328 AGCCACCTACAGATGCTTTACGCCCAATCATTCTGGATAACGCTTGCATGCTCTGTATTA 269 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||| |||||||| ||||| | || ||||||||| ||| || Sbjct 268 CCGCGGTTGCTGGCATAGAGTTAACTGTTGCTTATTCCCCAGATA 224 >seq62995 Length=884 Score = 113 bits (124), Expect = 7e-23 Identities = 162/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 64 TCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCA 123 |||| || |||||||||||||||||| ||| | |||||| |||| || | | |||| Sbjct 6 TCCG-ATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCC 64 Query 124 AGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGC 183 || | |||||| | || | ||||||||||| | ||| || ||||| Sbjct 65 AGCTTGATAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTTACGGTGGACTTAA 124 Query 184 CTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTAT 243 | |||||| | |||||| |||||| | ||| ||||||||||| ||| ||| Sbjct 125 AAAGCTACCTACAGACGCTTTACGCCCAATCATTCCAAATAACGCTTGCATCCTCTATAT 184 Query 244 TACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||| |||||||| ||||||||| || ||| Sbjct 185 TACCGCGGCTGCTGGCACAGAGTTAGCCAATGCTTATTCCCCAAGTA 231 >seq76382 Length=36427 Score = 111 bits (122), Expect = 3e-22 Identities = 171/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 44 GCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCC 103 || || ||| |||||||| | || ||||||||||| |||||| ||| | |||||| Sbjct 10460 GCTTTTGCCGTTGGTGTTCTTTTCGATCTCTACGCATTTTACCGCTCCACCGGAAATTCC 10519 Query 104 GATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCAT 163 |||| || | | |||| | |||||| | || | |||||||||| Sbjct 10520 CTCTGCCCCTACCGTACTCTTGTTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCTTG 10579 Query 164 AGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGAT 223 | ||| || | ||||| || |||||| | |||||| |||||| | | ||||| Sbjct 10580 GGATTTGACGGCGGACTTAAAAAGCCACCTACAAACGCTTTACGCCCAATCATTTCGGAT 10639 Query 224 AACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 || |||||| ||| |||||||| ||||||||||||| ||||||||| ||||||||| Sbjct 10640 AATGCTTGCATCCTCTGTATTACCACGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCC 10699 Query 284 TCAG 287 ||| Sbjct 10700 CCAG 10703 >seq25056 Length=8603 Score = 95.1 bits (104), Expect = 2e-17 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 198 GCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTG 257 || |||||| |||||| | ||||||||| |||||| ||| |||||||||||||||||| Sbjct 1500 GCGCTTTACGCCCAATCATTCCGGATAATGCTTGCATCCTCTGTATTACCGCGGCTGCTG 1559 Query 258 GCACGTAGTTAGCCGTGGCTTATTC 282 |||| ||||||||| |||||||| Sbjct 1560 GCACAGAGTTAGCCGATGCTTATTC 1584 >seq78701 Length=7519 Score = 91.5 bits (100), Expect = 2e-16 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 55 TGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTC 114 |||||||| | || || |||||||||||||||||| ||| | |||||| |||| || Sbjct 598 TGGTGTTCTTTCGGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTA 657 Query 115 CAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACAT 174 | | ||| || ||||| | || | || |||||||| | ||| || Sbjct 658 CCGTACTTCAGCTTGGTAGTTTTCACCGCCTGTCCAGGATTGAGCCCTGGGATTTGACTG 717 Query 175 CTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCA 234 | |||| | | |||| | ||||| |||||| | || |||||| ||||| Sbjct 718 CGAACTTAAAAAGCTACTTACAGACGCTTTATGCCCAATCATTCTAGATAACACTTGCAT 777 Query 235 CCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAG 287 ||| ||||||| || ||||||||||| ||||||||| ||||||||| ||| Sbjct 778 CCTTTGTATTACTGCAGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAG 830 >seq53782 Length=2939 Score = 91.5 bits (100), Expect = 2e-16 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 55 TGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTC 114 |||||||| | || || |||||||||||||||||| ||| | |||||| |||| || Sbjct 789 TGGTGTTCTTTCGGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTA 730 Query 115 CAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACAT 174 | | ||| || ||||| | || | || |||||||| | ||| || Sbjct 729 CCGTACTTCAGCTTGGTAGTTTTCACCGCCTGTCCAGGATTGAGCCCTGGGATTTGACTG 670 Query 175 CTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCA 234 | |||| | | |||| | ||||| |||||| | || |||||| ||||| Sbjct 669 CGAACTTAAAAAGCTACTTACAGACGCTTTATGCCCAATCATTCTAGATAACACTTGCAT 610 Query 235 CCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAG 287 ||| ||||||| || ||||||||||| ||||||||| ||||||||| ||| Sbjct 609 CCTTTGTATTACTGCAGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAG 557 >seq48903 Length=4706 Score = 91.5 bits (100), Expect = 2e-16 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 55 TGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTC 114 |||||||| | || || |||||||||||||||||| ||| | |||||| |||| || Sbjct 3918 TGGTGTTCTTTCGGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTA 3977 Query 115 CAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACAT 174 | | ||| || ||||| | || | || |||||||| | ||| || Sbjct 3978 CCGTACTTCAGCTTGGTAGTTTTCACCGCCTGTCCAGGATTGAGCCCTGGGATTTGACTG 4037 Query 175 CTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCA 234 | |||| | | |||| | ||||| |||||| | || |||||| ||||| Sbjct 4038 CGAACTTAAAAAGCTACTTACAGACGCTTTATGCCCAATCATTCTAGATAACACTTGCAT 4097 Query 235 CCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAG 287 ||| ||||||| || ||||||||||| ||||||||| ||||||||| ||| Sbjct 4098 CCTTTGTATTACTGCAGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAG 4150 >seq58508 Length=35601 Score = 87.8 bits (96), Expect = 3e-15 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||||| | |||||| || ||| | |||| |||||||||| ||| |||||||| Sbjct 176 CCACCTACAGACGCTTTACGCCTAATCATTCCGAATAACGCTTGTATCCTCTGTATTACC 117 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||||| ||||||||| ||||||| | ||| || Sbjct 116 GCGGCTGCTGGCATAGAGTTAGCCGATGCTTATTTCCCAGATA 74 >seq75293 Length=41890 Score = 78.8 bits (86), Expect = 2e-12 Identities = 102/139 (73%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 122 CAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTT 181 |||||| || ||||| | ||| || ||||||||||| | ||| || | ||||| Sbjct 25056 CAAGAATAA--GTTTCCACTGCCGGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTT 25113 Query 182 GCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGT 241 | |||||| | |||||| |||||| | |||||||||||||||| ||| || Sbjct 25114 AGAAAGCA-CCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGT 25172 Query 242 ATTACCGCGGCTGCTGGCA 260 |||||||||||||||| || Sbjct 25173 ATTACCGCGGCTGCTGCCA 25191 >seq51091 Length=6092 Score = 78.8 bits (86), Expect = 2e-12 Identities = 190/286 (66%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| ||||| | | |||||| | ||||||| |||||||| | Sbjct 4607 GCTTTCGTCTCTCAGTATCAGTGTCAGCCCAGCAGAGTGTTTTCGCCATTGGTGTTCTTT 4666 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 ||| ||| | |||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 4667 TTTATCTCTGCACATTTCACCGCTCCACCAGAAATTCCCTCTGCCGCTACCGTACTCCAG 4726 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTG-ACTTGCC 184 |||||| | || | ||||||| | | | ||| || | || Sbjct 4727 CTTGGTAGTTTCTACCGCCTGTCCAGGGTTGAAC---TGGGATTCGATGGTGGAGTTAAA 4783 Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244 | |||||| | |||||| |||||| || ||||||||||||| | | ||||| Sbjct 4784 AAGCTACCTACAGACGCTTTACGCCCAATCTTTCTGGATAACGCTTGCATCTTCTGTATT 4843 Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 | |||||||| ||||| |||||| | ||||||||| ||| || Sbjct 4844 ATCGCGGCTGGTGGCATAGAGTTAGTTGATGCTTATTCCCCAGATA 4889 >seq69644 Length=36573 Score = 77.0 bits (84), Expect = 5e-12 Identities = 150/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69 ATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAA 128 || ||||||||||| |||| | ||| |||||| | || || | | |||| || Sbjct 30646 ATCTCTACGCATTTTACCGTTCCACCGTAAATTCCCTCTACCCCTACCGTACTCCAGCTT 30587 Query 129 AACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCC 188 |||||| | ||| | | |||||||||| | ||| || ||||| | Sbjct 30586 CGTAGTTTCCACTGCCTGTCAAGGGTTGAGCCTTGGGATTTGACGGTGGACTTAAAAAGC 30527 Query 189 CGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCG 248 | |||||| | |||||| | |||| | |||| |||||||||| || |||||| | Sbjct 30526 CACCTACAGACGCTTTACGCTCAATCATTCCGAATAACGCTTGTATTCTCTATATTACTG 30467 Query 249 CGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||| ||||| ||||||||| ||||||| | ||| || Sbjct 30466 CGGCTGTTGGCATAGAGTTAGCCGATGCTTATTTCCCAGATA 30425 >seq16188 Length=282 Score = 77.0 bits (84), Expect = 5e-12 Identities = 59/70 (84%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 221 GATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTAT 280 |||||||||||| ||| ||||| |||||||||||||||| ||||||||| |||||| Sbjct 1 GATAACGCTTGCATCCTCTGTATTGCCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTAT 60 Query 281 TCCTCAGGTA 290 ||| ||| || Sbjct 61 TCCCCAGATA 70 >seq65714 Length=5499 Score = 73.4 bits (80), Expect = 7e-11 Identities = 156/233 (67%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 16 CTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTA 75 ||||| |||||| | | ||| || | || ||| |||||||| | | || |||| Sbjct 1325 CTCAGTGTCAGTGTCGGCCCAACAGAGTGGTTTTGCCGTTGGTGTTCTTTCCAATCTCTA 1384 Query 76 CGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAAAACAGTT 135 | |||||||||||| ||| | |||||| | || || | |||| || |||| Sbjct 1385 CACATTTCACCGCTCCACCAGAAATTCCCTGTACCCCTACCATACTCTAGCTTGGTAGTT 1444 Query 136 TCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTAC 195 || | || | | ||||||||| | ||| || | ||||| || ||||| Sbjct 1445 TCCACCGCCTGTCCAGCGTTGAGCCCTGGGATTTAACGGCGGACTTAAAAAGCCACCTAC 1504 Query 196 ACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCG 248 | | ||||||||||||| | ||| |||||||||||| ||| |||||| || Sbjct 1505 AAACGCTTTACACCCAATCATTCCAGATAACGCTTGCATCCTCTGTATTATCG 1557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828163284242