Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq76382 114 3e-23 seq136 105 1e-20 seq47321 98.7 2e-18 seq29494 95.1 3e-17 seq63204 93.3 9e-17 seq69644 89.7 1e-15 seq16188 87.8 4e-15 seq51091 86.0 1e-14 seq33944 86.0 1e-14 seq73058 84.2 5e-14 seq61482 82.4 2e-13 seq54183 80.6 6e-13 seq72869 75.2 2e-11 seq57797 75.2 2e-11 >seq76382 Length=36427 Score = 114 bits (126), Expect = 3e-23 Identities = 153/209 (73%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATC--CGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGAC 138 |||||| ||||||| | ||| | ||||| || |||||| | | ||||| || | | Sbjct 8777 AAAAGAGCTTTACAAGCGGCGTTGC-CCTTCTTCACTCACGCGATATTGCTGGATCGGGC 8835 Query 139 TCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTC 198 | | | |||||| |||| ||||||||||||| || ||||| ||||| |||||||||||| Sbjct 8836 TTTTGCCCATTGTCCAAGATTCCTCACTGCTACC-CCCGTGGGAGTCCGGACCGTGTCTC 8894 Query 199 AGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCG 258 ||| ||| ||||| || | ||| ||| | ||| |||| | |||| ||| ||| Sbjct 8895 AGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAATCATCATTGGCTTGGTCAGCCT 8954 Query 259 TTACCCCGCCTACTACCTAATGGAACGCA 287 ||||| || |||||||||| ||||| Sbjct 8955 TTACCTGACCAACTACCTAATACTACGCA 8983 >seq136 Length=202 Score = 105 bits (116), Expect = 1e-20 Identities = 148/209 (71%), Gaps = 18/209 (9%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 191 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 143 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| || |||||||||| || | ||| | ||||| ||| ||||| Sbjct 142 GC------TTCTTCTCTAGGAAAAGAAGTTCACGACTCGTGGG-CCTTCTACCTCCACGC 90 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 || | ||| |||| || ||| |||||| || ||||| ||||||| |||||||||| Sbjct 89 GACATTGCTCCATCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTGCTCCCTCCCGTAG 30 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGT 209 |||| ||| |||||||||||| ||| ||| Sbjct 29 GAGTCTGGGCCGTGTCTCAGTCCCAGTGT 1 >seq47321 Length=647 Score = 98.7 bits (108), Expect = 2e-18 Identities = 142/199 (71%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | || | | ||||| ||| ||||| | | ||| |||| || Sbjct 201 AAAAGAAGTTCACGACCCATGGG-CCTTCTACCTCCACGCGGCATTGCTCCATCAGGCTT 143 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| ||||||| ||||| |||||||| | | ||||||||||| Sbjct 142 TCGCCCATTGCGAAAAATTCCCCACTGCTACCTCCTGTAGGAGTCTAGGCCGTGTCTCAG 83 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | | | ||||| || | ||||||| || | ||| ||| | | || ||| || || Sbjct 82 TCCTAGTGTGGTTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 23 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 22 GCCTCACCAACTAGCTAAT 4 >seq29494 Length=886 Score = 95.1 bits (104), Expect = 3e-17 Identities = 147/211 (70%), Gaps = 18/211 (9%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 692 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCATCAT-----------T 740 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||| | ||||| ||| |||| Sbjct 741 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCTACGC 793 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || | | |||||| || ||||| ||||||||||||||||| Sbjct 794 GGCATTGCTCCGTCAGGCTTTTGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAA 853 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGG 211 |||| ||| |||||||||||| ||| ||||| Sbjct 854 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGG 884 >seq63204 Length=2691 Score = 93.3 bits (102), Expect = 9e-17 Identities = 100/131 (76%), Gaps = 1/131 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | ||||| ||| ||||| | | ||| ||| || Sbjct 1144 AAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGCAGCATTGCTCCGTCAAGCTT 1202 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 | | |||||| || ||||| |||||||||||||||||||||| | | ||||||||||| Sbjct 1203 TTGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTAGGCCGTGTCTCAG 1262 Query 201 TTCCAATGTGG 211 | ||| ||||| Sbjct 1263 TCCCAGTGTGG 1273 >seq69644 Length=36573 Score = 89.7 bits (98), Expect = 1e-15 Identities = 143/204 (70%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| | || || ||| ||||| |||||| || | ||| |||| || Sbjct 30402 AAAAGAAGTTCATAACCCATAGG-CCTTCTACCTTCATGCGGTATTGCTCTGTCAGGCTT 30344 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 | | | |||| || ||||| |||||||||||||| ||||||| | | ||||||||||| Sbjct 30343 TTGCCTATTGTGAAAAATTCCCCACTGCTGCCTCCCATAGGAGTCTAGGCCGTGTCTCAG 30284 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| | || |||| || | ||||| || | | | ||| || || Sbjct 30283 TCCCAGTGTGGCTAGTCATCATCTCGGACCACCTATTAATTATCGCGTTGGTAAGCTATT 30224 Query 261 ACCCCGCCTACTACCTAATGGAAC 284 || | || |||| |||||| ||| Sbjct 30223 GCCTCACCAACTAGCTAATGAAAC 30200 >seq16188 Length=282 Score = 87.8 bits (96), Expect = 4e-15 Identities = 156/228 (68%), Gaps = 20/228 (9%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || || || | Sbjct 30 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATAGCGTCAT-----------T 78 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| || |||||||||| || | ||| | ||||| ||| |||| Sbjct 79 GC------TTCTTCTCTAGGAAAAGAAGTTCACGACTCGTGGG-CCTTCTACCTCTACGC 131 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||| | ||||||||||||| |||| Sbjct 132 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTTCCCACTGCTGCCTCCTGTAG 191 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 | || ||| |||||||||||| || ||||| || | ||||||| || Sbjct 192 GTGTCTGGGCCGTGTCTCAGT--CAGTGTGGCTGATCATCCTCTCGGA 237 >seq51091 Length=6092 Score = 86.0 bits (94), Expect = 1e-14 Identities = 139/199 (70%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | ||||| ||| || | | ||| |||| || Sbjct 4912 AAAAGAAGTTCACGAACCGTGGG-CCTTCTACCTCTACAAGGCATTGCTCCGTCAGGCTT 4970 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 || |||||| || ||||| |||||||||||| ||||||||| ||| || |||||||| Sbjct 4971 TCACCCATTGCGGAAAATTCCCCACTGCTGCCTCTCGTAGGAGTCTGGGCCATGTCTCAG 5030 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| | ||| | | ||||||| || | ||| ||| | | || ||| || || Sbjct 5031 TCCCAGTATGGCTAATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 5090 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 5091 GCCTCACCAACTAGCTAAT 5109 >seq33944 Length=39369 Score = 86.0 bits (94), Expect = 1e-14 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 145 CCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCC 204 |||||| || ||||| |||||||| ||||||||||||| ||| |||||||||||| || Sbjct 3 CCATTGCGGAAAATTCCCCACTGCTGTCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCC 62 Query 205 AATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCC 264 | ||||| || | ||||||| || | ||| ||| | | | ||| | ||| || Sbjct 63 AGTGTGGCAGATCATCCTCTCTGACCAGCTACTGATCATCGCTTTGGTAAGTTGTTGCCT 122 Query 265 CGCCTACTACCTAAT 279 | || |||| ||||| Sbjct 123 CACCAACTAACTAAT 137 >seq73058 Length=14059 Score = 84.2 bits (92), Expect = 5e-14 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 154 AATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGG 213 || ||||| ||||||| |||||||||||||| ||| |||||||||||| ||| ||||| Sbjct 11229 AAAATTCCCCACTGCTACCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCT 11170 Query 214 GACCTTCCTCTCAGAACC 231 || | ||||||| ||||| Sbjct 11169 GATCATCCTCTC-GAACC 11153 >seq61482 Length=10188 Score = 82.4 bits (90), Expect = 2e-13 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 115 TCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTC 174 |||||| | | ||||| || | || ||| |||||| |||| ||||| || |||||| | Sbjct 6186 TCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCATTGCTGCTCC 6127 Query 175 CCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCT 234 |||| ||||| || |||||||||||| ||| ||||| || | || ||| | || Sbjct 6126 CCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGTTGATCATCTGAAAAGACCAGCT 6067 Query 235 ATCCATCGTAGGCTAGGTGGGCCGTTAC 262 | |||| | |||| ||| ||| |||| Sbjct 6066 AAGCATCATTGGCTTGGTCAGCCTTTAC 6039 >seq54183 Length=29906 Score = 80.6 bits (88), Expect = 6e-13 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 145 CCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCC 204 |||||| || ||||| |||||||||||||||||||||| ||| |||||||||||| || Sbjct 16708 CCATTGCGAAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCC 16767 Query 205 AATGTGGGGGACCTTCCTC 223 | ||| | || | ||||| Sbjct 16768 AGTGTAGCTGATCATCCTC 16786 >seq72869 Length=133583 Score = 75.2 bits (82), Expect = 2e-11 Identities = 93/126 (74%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 171 CCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAAC 230 |||||||||||||| ||| |||||||||||||||| ||||| || | ||||||| || | Sbjct 17627 CCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCGGACC 17568 Query 231 CCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGC-ATC 289 ||| ||| | | || ||| || || || | | |||| ||||| |||| | | Sbjct 17567 AGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCATCAACTAGCTAATCAGACGCGAGC 17508 Query 290 CCCATC 295 |||||| Sbjct 17507 CCCATC 17502 >seq57797 Length=49741 Score = 75.2 bits (82), Expect = 2e-11 Identities = 73/94 (78%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 135 AGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTG 194 || || ||| |||||| || ||||| || ||||||||||||||||||| | | | ||| Sbjct 27501 AGGCTTTCGCCCATTGCAGAAAATTCCCCAATGCTGCCTCCCGTAGGAGTCTTGGCTGTG 27560 Query 195 TCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 ||| ||| ||| ||||| || | ||||||| || Sbjct 27561 TCTTAGTCCCAGTGTGGTTGATCATCCTCTCGGA 27594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1067952420224