Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq35021 156 3e-33 >seq35021 Length=73443 Score = 156 bits (172), Expect = 3e-33 Identities = 561/857 (65%), Gaps = 28/857 (3%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 |||||| |||||||| ||||| || |||||||||||||| | |||||||||||| | Sbjct 66601 ATTTGGGAGATGTACAAGAAGGCAGAGGCTTCCTTCTGGACCGCCGAGGAGGTCGATCTA 66542 Query 61147 TCCAAAGACATGAATGACTGGG-AGCGTTTATCGAGCGGTGAACAACATTTCATTAAACA 61205 || | ||| | | | |||| ||| | | | || || | || ||||| | || Sbjct 66541 TCTCAGGACCTCCGTCAATGGGAAGCCCTCA-CTCCCGACGAGCGTCACTTCATCACTCA 66483 Query 61206 TGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTT 61265 || | || ||||| |||||||| || || || || |||||| | | || || Sbjct 66482 CGTTCTCGCCTTCTTCGCCGCTTCTGATGGCATTGTTTTGGAGAATCTCGCCGGTCGATT 66423 Query 61266 CGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGA 61325 | | | || || || | || || || ||| || ||||| ||||| || ||||| || Sbjct 66422 CATGAAAGAAGTTCAGATTTCCGAAGCCCGTGCCTTTTACGGTTTCCAAATCGCCATCGA 66363 Query 61326 GAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA--GCGGGCG 61383 |||| | ||||| |||||||| ||| | | |||| | ||||| | ||| | Sbjct 66362 GAATATTCACTCCGAGATGTATAGTCTCTTGCTCGAGTCTTACATAAAGGACTCCAATGA 66303 Query 61384 GAACGTGAAC-GATTGTTCAATGCCATCGAGACGATACC-GGCGGTGAAGCGGAAAGCGG 61441 ||| |||| || | || || ||||| || || || ||| |||| ||| || Sbjct 66302 GAA---GAACAGACTCTTTCGCGCAATCGAAACAATTCCTTGCGTTGAA-AAGAAGGCCA 66247 Query 61442 ATTGGGC-CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCA 61500 | ||||| |||| ||||||| | | ||| | |||| ||||| | | || Sbjct 66246 AATGGGCACTTC-GTTGGATCGACGG---CTCGGAATCCTTTGCCGAACGTATAGTCGCC 66191 Query 61501 TTTGCGGTGGTCGAGGGTGTATTTTTC-AGTGGATCGTTTGCCGCAATCTTTTGGTTGAA 61559 || || ||||| || |||||||| | ||| |||| ||| || |||||||| || Sbjct 66190 TTCGCTTGTGTCGAAGGAATATTTTTCTCGGGGAGTTTTTG-CGCGATATTTTGGTTAAA 66132 Query 61560 GAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGG 61619 ||||||||| ||||||||||| || |||||| || ||||| || || || ||||| || Sbjct 66131 GAAACGTGGCCTTATGCCCGGACTAACCTTCTCGAACGAGTTAATCTCCCGAGACGAAGG 66072 Query 61620 CATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGA 61679 | || || ||||| ||| || || | || | | | |||| | | || || Sbjct 66071 TCTCCACTGCGATTTCGCTTGCTTACTCTACAGTCTTCTGCGGATGAAACTT---TCCGA 66015 Query 61680 GGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACT 61737 ||| | | | | || || || || || |||||| ||||| |||| Sbjct 66014 GGAAAGAATCAGGGGAATCGTAGCGGATGCAGTTGATATCGAGAGAGAATTCGTCTG--C 65957 Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAA 61797 || ||| |||| | || | || ||||| | | |||||| ||||| |||||| Sbjct 65956 GATGCTCTGCCTTGTGCCCTAGTTGGTATGAACGGAGATCTAATGAGCCAGTACATTGAA 65897 Query 61798 TTTGTTGCCGACCGTCTGTTGGTCGATTTGGG-TAT-GAAGCGGATCTATAATACGAAAA 61855 || ||||| ||| | || | | | |||||| ||| ||| ||| |||||| | Sbjct 65896 TTCGTTGCAGACAGATTGCTTGAAGCTTTGGGATATCGAA--AGATGTATAATGTTCTGA 65839 Query 61856 ACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAAC 61915 | ||||| |||| ||||| ||||| || | || ||||||||||| |||||||| Sbjct 65838 ATCCATTCGATTGGATGGAATTGATTAGTTTGCAGGGGAAGACGAATTTCTTCGAGAAGA 65779 Query 61916 GTGTAGGCGACTATCAA 61932 | || || || |||||| Sbjct 65778 GAGTGGGAGAATATCAA 65762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397183753261280