Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq6087 398 1e-108 seq1835 383 3e-104 seq678 361 8e-98 seq5529 356 3e-96 seq252 210 3e-52 seq868 141 1e-31 seq328 113 7e-23 >seq6087 Length=58568 Score = 398 bits (440), Expect = 1e-108 Identities = 244/256 (95%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 13994 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 14051 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14052 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 14111 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 14112 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 14171 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| | Sbjct 14172 CCCAGAACATCTAAGGGCATCACAGACCGGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 14231 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 14232 GCCATAGTCCCTCTAA 14247 Score = 372 bits (412), Expect = 5e-101 Identities = 231/245 (94%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||||||||| |||||||||| |||||||||| ||||||||||||||| | Sbjct 31348 GTACAAAAGGCAGGGACGTACTCAACGCGAG-TTGATGACTCACGCTTACTAGGAATT-C 31405 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 31406 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 31465 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||| Sbjct 31466 CCCGGGCCTGTCGGCCAAGGCAATAGACTCGTTGAATACATCAGTGTAGCGCGTGTGCGG 31525 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 ||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||| | Sbjct 31526 CCCAGAACACCTAAGGGCATCACAGACCTGTTATTGCCTCAAACATCCTTGGCCTAAGCG 31585 Query 241 GCCAT 245 ||||| Sbjct 31586 GCCAT 31590 >seq1835 Length=198957 Score = 383 bits (424), Expect = 3e-104 Identities = 241/256 (94%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 || |||||||||||||| ||||||||||||||| |||||||||||||||||||||||| | Sbjct 52890 GTTCAAAGGGCAGGGACTTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATTAC 52832 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 52831 -TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 52773 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 52772 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGTGCGTGCGG 52713 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 52712 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 52653 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 52652 GCCATAGTCCCTCTAA 52637 >seq678 Length=338508 Score = 361 bits (400), Expect = 8e-98 Identities = 236/256 (92%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||| ||||||||||||||||| |||| |||||||||| ||||||||||||| | Sbjct 68967 GTACAAAGGGTAGGGACGTAGTCAACGCAAGCT-GATGACTCGCACTTACTAGGAATT-C 69024 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 69025 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 69084 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||| | |||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 69085 CCCAAGCTTGTCGGCCAAGGCTATAAACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 69144 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 ||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||| | Sbjct 69145 CCCAGAACATCTAAGGGTATCACAGACCTGTTATTGCCGCAAACTTCCTTGGCCTAAGCG 69204 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 69205 GCCATAGTCCCTCTAA 69220 >seq5529 Length=76990 Score = 356 bits (394), Expect = 3e-96 Identities = 235/256 (92%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | Sbjct 24589 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCACGCTTACTAGGAATT-C 24532 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 24531 CTCATTGAAGACCAACAATTGCAATGATCTATCCCTATCATGATGAAATTTCAAAGATTA 24472 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| ||| |||||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct 24471 CCCGGGCCTATCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTCGCGCGCGTGCGA 24412 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||| |||| |||||||||||||||||| |||| ||| | Sbjct 24411 CCCAGAACATCTAAGGGCATCACATACCTATTATTGCCTCAAACTTCCTTGGCATAAGCG 24352 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 24351 GCCATAGTCCCTCTAA 24336 >seq252 Length=683166 Score = 210 bits (232), Expect = 3e-52 Identities = 131/141 (93%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 105 GAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAG 164 |||||||||||||||||| || |||||||||||||| ||||||| |||||||||||||| Sbjct 526066 GAAATTTCAAAGATTACCTGGGCCTGTCGGCCAAGGCTATAGACTTGTTGAATACATCAG 526007 Query 165 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 224 ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 526006 TGTAGCGCGTGTGTGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 525947 Query 225 TTCCGTGGCCTAAAAGGCCAT 245 |||| |||||||| |||||| Sbjct 525946 TTCCTTGGCCTAAGCGGCCAT 525926 Score = 178 bits (196), Expect = 2e-42 Identities = 107/110 (97%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 528451 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 528394 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATT 110 |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 528393 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCATGATGAAATT 528344 >seq868 Length=567557 Score = 141 bits (156), Expect = 1e-31 Identities = 114/138 (83%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 98 TCACGATGAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAAT 157 ||| | ||||||| ||||||||||| || ||| |||||||||| ||||||||| |||| Sbjct 236909 TCATGTTGAAATTACAAAGATTACCTGGGCCTATCGGCCAAGGCTATAGACTCGCTGAAA 236968 Query 158 ACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||| ||||||| |||||||||||| ||||||||||||||| ||| |||| ||||| | Sbjct 236969 ACAATGGTGTAGCTTGCGTGCGGCCCAAAACATCTAAGGGCATTACAAACCTATTATTCC 237028 Query 218 CTCAAACTTCCGTGGCCT 235 |||||| ||| ||||| Sbjct 237029 CTCAAAAATCCTAGGCCT 237046 >seq328 Length=1310980 Score = 113 bits (124), Expect = 7e-23 Identities = 89/104 (86%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 153 TGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTT 212 |||||||| ||||||||| ||||| ||||| |||||| ||||||||||| ||||||||| Sbjct 1075493 TGAATACACCAGTGTAGCATGCGTGTGGCCCGGAACATATAAGGGCATCAAAGACCTGTT 1075552 Query 213 ATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255 |||| ||||||||||| |||||| | |||||| |||||| || Sbjct 1075553 ATTGTCTCAAACTTCCTTGGCCT-AGCGGCCATAGTCCCTCTAA 1075595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751881203505