Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq1835 134 8e-30 seq5529 116 2e-24 seq328 102 5e-20 >seq1835 Length=198957 Score = 134 bits (148), Expect = 8e-30 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| | ||||||| || Sbjct 52361 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGTCGGAGTCCTTAAAGTAACATCCGCC 52302 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 52301 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 52245 >seq5529 Length=76990 Score = 116 bits (128), Expect = 2e-24 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| ||||||||| ||||| | ||||||| | Sbjct 24060 GAACCCAAAGACTTTGATTTCTCAAAAGGTGCCGGCGGAGTCCTTAAAGTAACATCCGTC 24001 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||| |||||||||| Sbjct 24000 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTAGTCGTCTTCGA 23944 >seq328 Length=1310980 Score = 102 bits (112), Expect = 5e-20 Identities = 96/119 (81%), Gaps = 4/119 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAG--TCAAAATGATAACATCGC 58 ||||||||||||||| ||||||| ||||||| | ||| | || || | ||| ||| Sbjct 1075871 GAACCCAAAGACTTTAATTTCTCATAAGGTGTC-AGCAGGGTTCTTAAAG-TAATATCCG 1075928 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| | ||||||| ||||| |||| |||||| ||||||||||||| |||||||| Sbjct 1075929 CCGATCCTTGGTCGGCACCGTTTATGGTTGAGACTAGGACGGTATCTGATTGTCTTCGA 1075987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278357438730