Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq678 233 4e-59 seq328 210 4e-52 seq1835 205 2e-50 seq5529 201 2e-49 seq433 122 2e-25 >seq678 Length=338508 Score = 233 bits (258), Expect = 4e-59 Identities = 198/240 (83%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| |||| |||| | |||||||| ||||| Sbjct 67677 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAACATGGG 67736 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | |||| ||||| |||||| | ||| || ||||||||||| Sbjct 67737 ATAACATCATAGGAT-TCCGGTCCTATTCTGTTGGCCTTCGGGATCGGAGTAATGATTAA 67795 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 |||||| ||||||||| | ||||| || |||||||||||||||||||||||||| | Sbjct 67796 TAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAA 67855 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||||| Sbjct 67856 AGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 67914 >seq328 Length=1310980 Score = 210 bits (232), Expect = 4e-52 Identities = 196/245 (80%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 ||| |||||| ||||||||||| || ||||| |||| |||| | |||||||||||||| Sbjct 1076231 TTATTTTGAAGAAATTAGAGTGCTCGAAGCAAGCCTATGCTTTGGATACATTAGCATGGG 1076172 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | |||| ||||| |||||| | || | || |||||||||| Sbjct 1076171 ATAACATCATAGGAT-TCCGGTCCTATTCTGTTGGCATTCAGAATCGGAATAATGATTAA 1076113 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 |||||| ||||||||| | ||||| || |||| ||||||||||||||||||||| | Sbjct 1076112 TAGGGACAGTCGGGGGCATTTGTATTTCATAGTCATAGGTGAAATTCTTGGATTTATGAA 1076053 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 ||| ||| |||||||||| || |||||||||||||||| ||||| ||||||||||| Sbjct 1076052 AGATGAACAACTGCGAAAGTATTTGCCAAGGATGTTTTCATCAATCA-AGAACGAAAGTT 1075994 Query 314 AGGGG 318 |||| Sbjct 1075993 GGGGG 1075989 >seq1835 Length=198957 Score = 205 bits (226), Expect = 2e-50 Identities = 181/222 (82%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 98 TCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 |||||||| |||| |||| | |||||||||||||| |||| | |||||| | |||| Sbjct 52024 TCAAAGCAAGCCTACGCTCTGGATACATTAGCATGGGATAACATCATAGGAT-TCCGGTC 52082 Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 ||||| |||||| | ||| || ||||||||||||||||| ||||||||| | || Sbjct 52083 CTATTCTGTTGGCCTTCGGGATCGGAGTAATGATTAATAGGGACAGTCGGGGGCATTCGT 52142 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| || |||||||||||||||||||||||||| |||| ||| ||||||||||| || Sbjct 52143 ATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGATGAACAACTGCGAAAGCATT 52202 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||||||||||||| ||||||||||| |||| Sbjct 52203 TGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTGGGGG 52243 >seq5529 Length=76990 Score = 201 bits (222), Expect = 2e-49 Identities = 194/245 (79%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| |||| ||| | |||||||||||||| Sbjct 23700 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTTTGGATACATTAGCATGGG 23759 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | | || ||||| |||||| | || | |||||||||| Sbjct 23760 ATAACATCATAGGAT-TCCAGTCCTATTCTGTTGGCCTTCGTGATCAAAATAATGATTAA 23818 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 |||||| ||||||||| | ||||| || |||| ||||||||||||||||||||| | Sbjct 23819 TAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAAAGGTGAAATTCTTGGATTTATGAA 23878 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 ||| ||| ||||||||||| || ||||||||||||| |||||||| |||| |||||| Sbjct 23879 AGATGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTAATTAATCA-AGAACAAAAGTT 23937 Query 314 AGGGG 318 |||| Sbjct 23938 GGGGG 23942 >seq433 Length=419541 Score = 122 bits (134), Expect = 2e-25 Identities = 110/136 (81%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| |||| ||||| | |||||||||||||| Sbjct 48929 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTATGCTCTGGATACATTAGCATGGG 48870 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | |||| ||||| | |||| | ||| || ||||||||||| Sbjct 48869 ATAACATCATAGGA-TTCCGGTCCTATTCTTTTGGCCTTCGGGATCGGAGTAATGATTAA 48811 Query 194 TAGGGATAGTCGGGGG 209 |||||| |||| |||| Sbjct 48810 TAGGGAAAGTCAGGGG 48795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915050758336