Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq1285 197 4e-48 seq59 125 2e-26 >seq1285 Length=268354 Score = 197 bits (218), Expect = 4e-48 Identities = 240/327 (73%), Gaps = 0/327 (0%) Strand=Plus/Plus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||| ||||||||| ||||||||||| ||| |||||| ||| ||||||||||| Sbjct 256668 GAATAAGCATCGGCTAACTCTGTGCCAGCAGCTGCGATAATACAGAGGATGCAAGCGTTA 256727 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 |||||| | |||||||||||||| | ||| || | | |||| | | || ||||||| Sbjct 256728 TCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAATCCC 256787 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTG 190 ||||| ||| ||| || | | ||| | || |||| | || || | | Sbjct 256788 AGGGCTCTACCCTGGACAAGCGGTGGAAACTTCCAAGCTGGAGTACGGTAGGGGCAGAGG 256847 Query 191 GAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCA 250 ||||| | ||| ||| |||||||||||||| || | | ||||||||| |||||| ||| Sbjct 256848 GAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGCA 256907 Query 251 GCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGAT 310 | ||||| |||||||| || | |||||||| ||||||| || || |||||| Sbjct 256908 CTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGGTTAGAT 256967 Query 311 ACCCTGGTAGTCCACGCCCTAAACGAT 337 |||| ||||||| ||| |||||||| Sbjct 256968 ACCCCAGTAGTCCTAGCCGTAAACGAT 256994 >seq59 Length=835084 Score = 125 bits (138), Expect = 2e-26 Identities = 234/342 (68%), Gaps = 20/342 (6%) Strand=Plus/Plus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTA------GGGTG 61 || ||| |||| | | |||||| |||||||||||||||||||| ||| ||| | Sbjct 28867 GAGGAAGAAGCCCTGACTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGTGGGAGGGGGG 28926 Query 62 CAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGT- 120 |||| || || |||| ||||||||||||| | || |||| ||| | | ||| Sbjct 28927 CAAGTATTCTTCAGAATGACTGGGCGTAAAGGGAACGTAGGC-----TGTGAATCGGGTT 28981 Query 121 ----GTGAAATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTG 175 |||||| | | | || |||| | | ||| | | || ||| ||||| Sbjct 28982 GAAAGTGAAAGTCGC---CAAAAACTGGCGGAATGCTCTCGAAACCAATTCACTTGAGTG 29038 Query 176 TGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACA 235 | |||| | | |||||||| | |||||| ||||||| | |||| | | |||||| Sbjct 29039 AGACAGATGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCAGAGATCTACGAAGGAACG 29098 Query 236 CCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAG 295 |||| | ||||||||| | ||||| || ||| || | ||||||| ||||||| Sbjct 29099 CCAAAAGTGAAGGCAGCTCTCTGGGTCCCTACGGACACTGGGGTGCGAAAGCATGGGGAG 29158 Query 296 CAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 | ||| ||||||||||||| |||||||| || ||||| || Sbjct 29159 CGAACGAGATTAGATACCCTAGTAGTCCATGCTGTAAACTAT 29200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289389704928