Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1434 138 2e-30 seq1512 127 3e-27 seq3416 114 2e-23 seq1443 114 2e-23 >seq1434 Length=474730 Score = 138 bits (152), Expect = 2e-30 Identities = 178/243 (73%), Gaps = 12/243 (5%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | | ||||||| ||||| ||| | | | || Sbjct 361065 CCTTCCAGCACCGGGCAGGTGTCAGACTCTGTACATCGTGTTACCA-CTTAGTAGAGTCC 361123 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | || | | | ||||| | Sbjct 361124 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGTCGCTTTC--CTACTCAAAAGA 361181 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||| ||| ||||||||||| ||||| Sbjct 361182 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACAGGGTCATTTTGCCGAGTTCCT 361232 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || |||| | | | |||| |||||| |||||| || ||||||||||||||| | Sbjct 361233 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 361292 Query 246 GTA 248 ||| Sbjct 361293 GTA 361295 >seq1512 Length=221874 Score = 127 bits (140), Expect = 3e-27 Identities = 174/243 (72%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 15664 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 15722 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 15723 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 15769 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || | ||||||||||||||||||||||||| || ||||||| ||||| Sbjct 15770 TTGTG----AGGAG--GTACCCCTTCTCCCGAAGTTACGGGGCTATCTTGCCGAGTTCCT 15823 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| ||||||||||| |||| | Sbjct 15824 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCAGTTTCGG 15883 Query 246 GTA 248 ||| Sbjct 15884 GTA 15886 >seq3416 Length=231096 Score = 114 bits (126), Expect = 2e-23 Identities = 171/243 (70%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| ||| || ||| Sbjct 29216 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACAA-CTTTGCGGAGACA 29158 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| ||||||| |||| | || || |||||||| || Sbjct 29157 TGTGTTTTTGGTAAACAATCGCCTGAGCCTGGTCACTGCGACCCCCT------------- 29111 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||| ||||||||| ||||||| || ||||| Sbjct 29110 TTGTG----AGGAG--GCACCCCTTCTCCCGAACTTACGGGGCTATTTTGCTGAGTTCCT 29057 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| ||||| |||||||| | | Sbjct 29056 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCCGTGTCGGTGTTGG 28997 Query 246 GTA 248 ||| Sbjct 28996 GTA 28994 >seq1443 Length=413265 Score = 114 bits (126), Expect = 2e-23 Identities = 171/243 (70%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||| || |||| || |||||| | ||||| | ||| || |||| Sbjct 397517 CCTTCCGGCACTGGGCAAGCATCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 397575 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 397576 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 397622 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||| || ||||||||||| ||||||| || ||||| Sbjct 397623 TTGTG----AGGAG--GCACCCCTTCTACCAAAGTTACGGGGTTATTTTGCTGAGTTCCT 397676 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 397677 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCAG 397736 Query 246 GTA 248 ||| Sbjct 397737 GTA 397739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694290302811