Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq1512 251 2e-64 seq3416 228 2e-57 seq1443 210 6e-52 seq1434 129 1e-27 seq179 87.8 5e-15 >seq1512 Length=221874 Score = 251 bits (278), Expect = 2e-64 Identities = 305/418 (73%), Gaps = 27/418 (6%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 15474 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 15533 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| ||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 15534 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGAAATTTAGCTACCTTAGGACCGTTA 15593 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||| ||||||| |||||||||||| || ||| | | | || | ||| Sbjct 15594 TAGTTACGGTCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 15653 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 15654 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 15713 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 15714 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CC 15767 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | || ||| ||||||||||||||||||| || | Sbjct 15768 CTTTGTGAGGAGGT-----ACC------------CCTTCTCCCGAAGTTACGGGGCTATC 15810 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 15811 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 15868 >seq3416 Length=231096 Score = 228 bits (252), Expect = 2e-57 Identities = 300/418 (72%), Gaps = 27/418 (6%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 29406 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 29347 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 29346 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 29287 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTT-CGATCAAGA---GCTTCGCGTTAGCTAACCC 188 | ||||||||| ||||| |||||||||| || | || | | | | || | ||| Sbjct 29286 TAGTTACGGCCACCGTTCACCGGGGCTTCCGCTGCCGACTCCCCTGTCATCAGGTCACCA 29227 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| | ||| Sbjct 29226 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACAACTTT 29167 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| ||||||||| |||||| |||| ||||||| || ||||| Sbjct 29166 GCGGAGACATGTGTTTTTGGTAAACAATCGCCTGAGCCTGGTCACTGCGACC------CC 29113 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | ||| | |||||||||||| |||||| || || Sbjct 29112 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAACTTACGGGGCTATT 29070 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 |||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 29069 TTGCTGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 29012 >seq1443 Length=413265 Score = 210 bits (232), Expect = 6e-52 Identities = 301/426 (71%), Gaps = 31/426 (7%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||||| || || ||||||| ||| ||| | ||||||| ||| Sbjct 397321 TACTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTTCGAGACAGTGCCCAG 397380 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||||||| || |||| |||| |||||||||||| |||||||||||||||||||||| Sbjct 397381 ATCGTTACGCCTTTAGTGCGGGTCAGAACTTACCCGATAAGGAATTTCGCTACCTTAGGA 397440 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGC-GTTAGCTAA 185 |||||| |||||| | ||| || || || |||||| || ||| | | || | ||| Sbjct 397441 CCGTTAGAGTTACGACTGCCATTCACTGGCGCTTCGGTCGCCGGCTCCCCTGTCA--TAA 397498 Query 186 CCCCATCAA-----TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 || ||| || |||||||||||| ||||| || ||| ||| |||| | ||| Sbjct 397499 GGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAAGCATCAGCCCCCATACATGGTCTT 397558 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 || ||||| ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 397559 ACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC 397618 Query 301 GGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACG 360 ||| ||| | ||| | |||||| || |||||||| Sbjct 397619 ------CCCTTTGTGAGGA-----------------GGCACCCCTTCTACCAAAGTTACG 397655 Query 361 GTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCC 420 | | |||||| |||||||| ||||| |||| || ||| ||||||||||||| Sbjct 397656 GGGTTATTTTGCTGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCT 397715 Query 421 AACCAC 426 | |||| Sbjct 397716 ACCCAC 397721 >seq1434 Length=474730 Score = 129 bits (142), Expect = 1e-27 Identities = 221/318 (69%), Gaps = 21/318 (7%) Strand=Plus/Plus Query 101 CGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTT 160 ||||||||||||||||||||||||| | |||| ||||| | ||| ||||||| ||| || Sbjct 360973 CGACAAGGAATTTCGCTACCTTAGGGCAGTTAGAGTTACTGTCGCTGTTTACCAGGGATT 361032 Query 161 CGATCAAGAGCTTCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGT 220 || | ||||| || | || | | ||||||| |||||||||||| || Sbjct 361033 TCATTCAAAGCTTA----TAAC--ACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGT 361086 Query 221 CACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCA 280 || || || ||| || || | || | ||||| ||||||||||||||||||||||| Sbjct 361087 CAGACTCTGTACATCGTGTTACCACTTAGTAGAGTCCTGTGTTTTTAATAAACAGTCGCT 361146 Query 281 GCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCG 340 | |||||||| | | | || | | ||| | | | | || Sbjct 361147 ACCCCCTGGTATGT--GTC--GCTT--TCCTACTCAAAAGATAGGAGA---------GCA 361191 Query 341 CACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAG 400 | ||||||||||||||||| | | | ||||||| ||||||||| | ||||||||||| Sbjct 361192 CCCCTTCTCCCGAAGTTACAGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG 361251 Query 401 CGCCTTGGTATTCTCTAC 418 |||| | |||| |||||| Sbjct 361252 CGCCCTAGTATACTCTAC 361269 >seq179 Length=1120217 Score = 87.8 bits (96), Expect = 5e-15 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 91 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTT 150 |||||||||| ||||||||||||| |||||||| ||||||||| |||| || || |||| Sbjct 266999 GGAACTTACCGGACAAGGAATTTCACTACCTTAAGACCGTTATAGTTAGGGTCGTCGTTC 266940 Query 151 ACCGGGGC 158 |||||||| Sbjct 266939 ACCGGGGC 266932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260594401344