Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq1512 315 2e-83 seq3416 309 6e-82 seq1443 295 1e-77 seq1434 176 1e-41 seq931 132 1e-28 seq179 87.8 4e-15 seq3422 78.8 2e-12 seq665 73.4 8e-11 >seq1512 Length=221874 Score = 315 bits (348), Expect = 2e-83 Identities = 284/353 (80%), Gaps = 8/353 (2%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 15474 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 15533 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 15534 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGAAATTTAGCTACCTTAGGACCGTTA 15593 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||| ||||||| || ||||||| || | ||| | | | || | || Sbjct 15594 TAGTTACGGTCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 15653 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 15654 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 15713 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCA 299 || || ||||||||||||||||||||||||| |||||| || ||||| ||| | Sbjct 15714 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGT 15773 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || ||| |||||||||||| ||||||||||| || ||||||||||||||| Sbjct 15774 GAG-GAGGTACCCCTTCTCCCGAAGTTACGGGGCTATCTTGCCGAGTTCCTTA 15825 >seq3416 Length=231096 Score = 309 bits (342), Expect = 6e-82 Identities = 286/359 (80%), Gaps = 20/359 (6%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 29406 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 29347 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 29346 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 29287 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCT---AACAGA 183 ||||||||||| ||||| || |||||| | | |||| ||| | | || | ||| Sbjct 29286 TAGTTACGGCCACCGTTCACCGGGGCT----TCCGCTGC--CGACTCCCCTGTCATCAGG 29233 Query 184 TC-------CCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGC 236 || |||| ||||||| |||| |||||||||||||| || |||||| ||||| | Sbjct 29232 TCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC 29173 Query 237 GACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GC 293 |||| || || || ||||||||||||||||| |||| || |||| || ||||| | Sbjct 29172 AACTTTGCGGAGACATGTGTTTTTGGTAAACAATCGCCTGAGCCTGGTCACTGCGACCCC 29113 Query 294 CTGTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || | || |||||||||||||||| || |||||||| ||||||| |||||||||| Sbjct 29112 CTTTGTGAG-GAGGCACCCCTTCTCCCGAACTTACGGGGCTATTTTGCTGAGTTCCTTA 29055 >seq1443 Length=413265 Score = 295 bits (326), Expect = 1e-77 Identities = 282/359 (79%), Gaps = 8/359 (2%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| || | | ||||||||||||| Sbjct 397321 TACTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTTCGAGACAGTGCCCAG 397380 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 |||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 397381 ATCGTTACGCCTTTAGTGCGGGTCAGAACTTACCCGATAAGGAATTTCGCTACCTTAGGA 397440 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT----TGCTC 176 |||||| ||||||| | ||| || ||||| |||| || | ||| | | | Sbjct 397441 CCGTTAGAGTTACGACTGCCATTCACTGGCGCTTCGGTCGCCGGCTCCCCTGTCATAAGG 397500 Query 177 TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGC 236 | || | |||| ||||||| |||| ||||| || ||||| || |||||| ||||| | Sbjct 397501 TCACCAACTTCCTTGACCTTCCGGCACTGGGCAAGCATCAGCCCCCATACATGGTCTTAC 397560 Query 237 GACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GC 293 ||||| || || ||||||||||||||||||||||||| |||||| || ||||| | Sbjct 397561 GACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCC 397620 Query 294 CTGTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || | || ||||||||||||| || |||||||||||| ||||||| |||||||||| Sbjct 397621 CTTTGTGAG-GAGGCACCCCTTCTACCAAAGTTACGGGGTTATTTTGCTGAGTTCCTTA 397678 >seq1434 Length=474730 Score = 176 bits (194), Expect = 1e-41 Identities = 208/282 (74%), Gaps = 20/282 (7%) Strand=Plus/Plus Query 95 CGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 154 ||||||||||||||||||||||||| | |||| |||||| | ||| |||||| ||| || Sbjct 360973 CGACAAGGAATTTCGCTACCTTAGGGCAGTTAGAGTTACTGTCGCTGTTTACCAGGGATT 361032 Query 155 AAGTTCACTGCTTCGATTGCTCTAACAGATCCCCTTA--ACCTTCCAGCACCGGGCAGGC 212 |||| |||| ||||| || |||| |||||||||||||||||||| Sbjct 361033 TCATTCAAAGCTTA--------TAACACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGT 361084 Query 213 GTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCG 272 ||||| || |||||||| || | |||||| ||| ||||||||||| |||||||||| Sbjct 361085 GTCAGACTCTGTACATCGTGTTACCACTTAGTAGAGTCCTGTGTTTTTAATAAACAGTCG 361144 Query 273 CTTGGGCCTATTCTCTGCGGCCTGTC------ATAGACAG----GCACCCCTTCTCCCTA 322 || ||| | | || || | | | ||| || |||||||||||||| | Sbjct 361145 CTACCCCCTGGTATGTGTCGCTTTCCTACTCAAAAGATAGGAGAGCACCCCTTCTCCCGA 361204 Query 323 AGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 |||||| |||||||||||||||||||||| || |||||| Sbjct 361205 AGTTACAGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTC 361246 >seq931 Length=1089762 Score = 132 bits (146), Expect = 1e-28 Identities = 105/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 ||||||| || | || | |||||||||| || | ||||||||||||| |||||| Sbjct 280437 GCATCTTTACAGACATATCTATTTCACCGAACCTCTCTCCGAGACAGTGCCCAGATCGTT 280496 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||| |||||||||||||| ||||||| |||||||||| |||||||| ||| |||||||| Sbjct 280497 ACGCTTTTCGTGCGGGTCGAAACTTACACGACAAGGAACTTCGCTACTTTATGACCGTTA 280556 Query 127 TAGTTA 132 |||||| Sbjct 280557 TAGTTA 280562 >seq179 Length=1120217 Score = 87.8 bits (96), Expect = 4e-15 Identities = 68/80 (85%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 85 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTT 144 |||||||||| ||||||||||||| |||||||| |||||||||||||| || || |||| Sbjct 266999 GGAACTTACCGGACAAGGAATTTCACTACCTTAAGACCGTTATAGTTAGGGTCGTCGTTC 266940 Query 145 ACTGGGGCTTAAGTTCACTG 164 || ||||| | ||||| || Sbjct 266939 ACCGGGGCCT--GTTCAGTG 266922 >seq3422 Length=263475 Score = 78.8 bits (86), Expect = 2e-12 Identities = 72/90 (80%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 184 TCCCCTTA--ACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTT 241 || ||||| |||||||||||||||||| | | ||| ||||||||||| || | |||| Sbjct 61915 TCTCCTTACTACCTTCCAGCACCGGGCAAGTGCCAGAATCTATACATCGTGTTACCACTT 61856 Query 242 AGCAGAAACCTGTGTTTTTGGTAAACAGTC 271 |||||| ||| ||||||| |||||| || Sbjct 61855 AGCAGAGTCCTATGTTTTTATTAAACAATC 61826 >seq665 Length=900270 Score = 73.4 bits (80), Expect = 8e-11 Identities = 67/85 (79%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || ||||||||||| || | ||||||| || ||| |||||| Sbjct 566638 GCATCTTCACAGACATGTTTATTTCACCGAGCCTCTCTCTGAGACATTGGCCATATCGTT 566697 Query 67 ACGCCTTTCGTGCGGGTCGGAACTT 91 ||| ||||||||| |||||||||| Sbjct 566698 ACGTCTTTCGTGCATGTCGGAACTT 566722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062226754432