Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq330 322 1e-85 seq59 140 1e-30 seq11 122 3e-25 seq1372 107 6e-21 seq6407 84.2 7e-14 seq2005 82.4 2e-13 >seq330 Length=490573 Score = 322 bits (356), Expect = 1e-85 Identities = 371/496 (75%), Gaps = 4/496 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||| ||||||||| ||||||| |||||| |||||||||||| Sbjct 376067 TACGTTCGCAAGAATGAAACACAAAGGAATGGACGGGGGCCCGCAG--GCGGTGGAGCAT 376010 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| | ||||| ||||||| | |||||||| | | |||| Sbjct 376009 GTGGTTTAATTCGATGCAAAGTAAAGAATCTTACCAGAGCTTGACATGCAGCGGATCCTC 375950 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | ||| ||||| | || || |||| |||| | ||| ||| ||||||| || ||||| Sbjct 375949 TTGAGGGAGAGGGGTGCC-TTAGGGGAACAGCGACACAAGTGGTGCATGGCTGATGTCAG 375891 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 ||| || || | || || |||||||| |||||| | ||||||||| | ||||||| Sbjct 375890 CTCATGCTGTATGGTGCTGAGTTAAGTCTCGCAACAAACGCAACCCTCGCGTGTAGTTGC 375831 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || |||| |||| || || | ||| |||| |||||| || || |||||||||| ||| Sbjct 375830 CACCATTGAGTTTGGAACCTTGAGTAGACTATCGGTGATAAGCCCGAGGAAGGTGAGGAT 375771 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||||||||| ||||||||||| |||| ||||||||| ||||||| || Sbjct 375770 GACGTCAAATCATCGTGCCCCTTATGCCCTGGGTGACACACGTGTTACAATGTTTGGGAC 375711 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| || |||| ||| || ||| || || |||| ||||||||| Sbjct 375710 AAAGGGTTGCGATCTCGTGAGGGTGAGCTAACTCCAACAACCCGTCCTCAATTCGGATTG 375651 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATC-AGCATGCTA 479 || || |||||| | ||||||| | ||| |||||||||||| | || | ||| Sbjct 375650 CAGGCTTCAACTCACTTGCATGAAGCCGAAATTGCTAGTAATCGTCGGTCAACCATATGG 375591 Query 480 CGGTGAATACGTTCCC 495 |||||||| | ||||| Sbjct 375590 CGGTGAATTCCTTCCC 375575 >seq59 Length=835084 Score = 140 bits (154), Expect = 1e-30 Identities = 172/234 (74%), Gaps = 17/234 (7%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||| |||| || | ||||| |||||||||| Sbjct 29268 TACGGTCGCAAGACCGAAACTCAAAGGAATTGATGGGGGCCTGTACAAGTGGTGGAGCAT 29327 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||| | ||||||||||| ||||||| | ||| Sbjct 29328 GTGGTTTAATTCGATACAACGCGCAAAACCTTACCAACCCTTGACA---TATGA------ 29378 Query 121 TAGAGATAGAGGTTTCCCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTG 173 | | | | | ||| ||| || || | | |||| || |||||| || Sbjct 29379 -ACAACAAAACCTGTCCTTAACGGGATGGTACTTACTTTCATACAGTTGTTGCATGTCTG 29437 Query 174 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||||||| ||||||||||||||||| ||| |||||| |||||||| |||||| Sbjct 29438 TCGTCAGTTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCT 29491 >seq11 Length=1586642 Score = 122 bits (134), Expect = 3e-25 Identities = 79/87 (91%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct 1517891 CGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGTTT 1517832 Query 67 TAATTCGAAGCAACGCGAAGAACCTTA 93 ||||| || |||| || |||||||||| Sbjct 1517831 TAATTTGATGCAAAGCAAAGAACCTTA 1517805 >seq1372 Length=257202 Score = 107 bits (118), Expect = 6e-21 Identities = 82/97 (85%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||||||| | ||||||||||||||||| Sbjct 220074 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCTTACACAAGCGGTGGAGCAT 220133 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAA 97 |||||||||||||| | || || | ||||||||||| Sbjct 220134 GTGGTTTAATTCGATACGACACGCAAAACCTTACCAA 220170 >seq6407 Length=59618 Score = 84.2 bits (92), Expect = 7e-14 Identities = 78/98 (80%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 158 AGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGA 217 ||||| ||||| | | | || |||||||| || || ||||||| ||||||||||||||| Sbjct 24924 AGGTGGTGCATAGCTATTGT-AGCTCGTGCTGTAAGGTGTTGGGGTAAGTCCCGCAACGA 24866 Query 218 GCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGG 255 ||||||||| | | |||||||||| || |||| || Sbjct 24865 CCGCAACCCTCATGTTTAGTTGCCACTGTTGAGTTTGG 24828 >seq2005 Length=366411 Score = 82.4 bits (90), Expect = 2e-13 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 |||| || |||| | || | ||||| ||||||| |||||||| | |||| |||||||| Sbjct 269090 GACTTCCAGTGATATACTGTAGGAATGTGGGGATGACGTCAAGTTCGCATGGCCCTTATG 269031 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 | || ||| ||||||||||||||| | ||||| ||| ||| | | |||| | Sbjct 269030 GGCTAGGTCACATACGTGCTACAATGGAAATTACAATGGGAAGCTAGATTATAAGGTGGA 268971 Query 387 GCAAATCC 394 |||||||| Sbjct 268970 GCAAATCC 268963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503754742720