Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq678 288 2e-75 seq1835 275 1e-71 seq5529 271 1e-70 seq328 233 3e-59 seq6087 141 1e-31 seq252 116 6e-24 seq942 84.2 3e-14 seq12209 77.0 5e-12 seq868 77.0 5e-12 >seq678 Length=338508 Score = 288 bits (318), Expect = 2e-75 Identities = 221/259 (85%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 69111 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGTATCACAGA 69170 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||| ||||||||| | | || |||| | |||||||||||||||||| | Sbjct 69171 CCTGTTATTGCCGCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 69228 Query 120 CCACCAACC-ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 || | || || | |||| |||||||| ||||||||||||||||| | |||| Sbjct 69229 TCATGGAGGTATCCTCCGCGTAGCTAGTTAGCAGGCTAAGGTCTCGTTCGTTAACAGAAT 69288 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 69289 TAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 69348 Query 239 GAAAGAGCTATCAATCTGT 257 ||||||||| ||| ||||| Sbjct 69349 GAAAGAGCTCTCAGTCTGT 69367 >seq1835 Length=198957 Score = 275 bits (304), Expect = 1e-71 Identities = 219/260 (84%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 52746 ACTCGTTGAATACATCAGTGTAGCGTGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 52687 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 52686 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 52629 Query 120 CCACCAACC-ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 || | | || || |||| || ||||| | ||||||| ||||||| || ||| Sbjct 52628 CCGCGGAGGTATCCTCTGCATAGCTAGTTTGCAGGCTGAGGTCTCTTTCGTTAACGTAAT 52569 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 52568 TAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATATAATCAA 52509 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| ||| |||||| Sbjct 52508 GAAAGAGCTCTCAGTCTGTC 52489 >seq5529 Length=76990 Score = 271 bits (300), Expect = 1e-70 Identities = 219/260 (84%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||||||| ||||||||||| |||||||||||||||||||||||| | Sbjct 24445 ACTCGTTGAATACATCAGTGTCGCGCGCGTGCGACCCAGAACATCTAAGGGCATCACATA 24386 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 ||| |||||||||||||||||| ||||| |||| | |||||||||||||||||| Sbjct 24385 CCTATTATTGCCTCAAACTTCC-TTGGCAT-AAGCGGCCATAGTCCCTCTAAGAAGCTGA 24328 Query 120 CCACCAACC-ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 || | | || || | |||| |||||||| | ||||||||||||||| |||||| Sbjct 24327 CCGCGGAGGTATCCTCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAAT 24268 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24267 TAACAAGATAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 24208 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| ||| |||||| Sbjct 24207 GAAAGAGCTCTCAGTCTGTC 24188 >seq328 Length=1310980 Score = 233 bits (258), Expect = 3e-59 Identities = 199/243 (82%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||| ||||| ||||| |||||| ||||||||||| ||||||||||||| |||| Sbjct 1075502 CAGTGTAGCATGCGTGTGGCCCGGAACATATAAGGGCATCAAAGACCTGTTATTGTCTCA 1075561 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACC-ATAGTCG 135 ||||||| | | || | |||| |||||||||||||| | ||| | | || || Sbjct 1075562 AACTTCCTTGGCCTAGCGGCCA-TAGTCCCTCTAAGATGTTGGCCGCGGAGGTATCCTCT 1075620 Query 136 ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACT 195 |||| |||| || || ||||||||||| ||| | ||||||| ||||||||| || Sbjct 1075621 GCATAGCTAGTTAGTAGATTGAGGTCTCGTTCCTTAATGAAATTAACTAGACAAATCGCT 1075680 Query 196 CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 1075681 CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCT 1075740 Query 256 GTC 258 ||| Sbjct 1075741 GTC 1075743 >seq6087 Length=58568 Score = 141 bits (156), Expect = 1e-31 Identities = 103/116 (89%), Gaps = 4/116 (3%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14138 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 14197 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAG 115 || ||||||||||||||||||| ||||| |||| | ||||||||||||||||| Sbjct 14198 CCGGTTATTGCCTCAAACTTCC-TTGGC-CTAAGCGGCCATAGTCCCTCTAAGAAG 14251 Score = 114 bits (126), Expect = 2e-23 Identities = 79/88 (90%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||||||||||||| ||||||||||||||| |||||||||||||||| Sbjct 31492 ACTCGTTGAATACATCAGTGTAGCGCGTGTGCGGCCCAGAACACCTAAGGGCATCACAGA 31551 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGC 89 |||||||||||||||||| ||| ||||| Sbjct 31552 CCTGTTATTGCCTCAAACATCC-TTGGC 31578 >seq252 Length=683166 Score = 116 bits (128), Expect = 6e-24 Identities = 71/74 (96%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 526010 TCAGTGTAGCGCGTGTGTGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 525951 Query 76 AAACTTCCATTGGC 89 |||||||| ||||| Sbjct 525950 AAACTTCC-TTGGC 525938 >seq942 Length=313263 Score = 84.2 bits (92), Expect = 3e-14 Identities = 85/113 (75%), Gaps = 11/113 (10%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGG-----------AATTAACCAGACAAA 190 ||| |||| ||| | ||||||||||| ||| ||| |||||||||||| | Sbjct 148758 CTAGTTAGAAGGCTGAGGTCTCGTTCATTAACGGTTGATTAACATAATTAACCAGACTAG 148817 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAG 243 || || ||||||||||| || || |||||||||||||| ||||||||||| Sbjct 148818 TCGCTTAACCAACTAAGATCGATAATACACCACCACCCATAAAATCAAGAAAG 148870 >seq12209 Length=3188 Score = 77.0 bits (84), Expect = 5e-12 Identities = 76/97 (78%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 97 CAATAGTCCCTCTAAGAAGCCAGCCACCAACC-ATAGTCGATGGGGCTATTTAGCAGGTT 155 |||||||||||||||||||| | | | | || || |||| |||||||| | Sbjct 3092 CAATAGTCCCTCTAAGAAGCTGGTCGCGGAGGTATCCTCCGCATAGCTAGTTAGCAGGCT 3151 Query 156 AAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 ||||||||||||||| |||||||||||||||||||| Sbjct 3152 GAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATC 3188 >seq868 Length=567557 Score = 77.0 bits (84), Expect = 5e-12 Identities = 53/60 (88%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 19 GTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAA 78 ||||||| |||||||||||| ||||||||||||||| ||| |||| ||||| ||||||| Sbjct 236975 GTGTAGCTTGCGTGCGGCCCAAAACATCTAAGGGCATTACAAACCTATTATTCCCTCAAA 237034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796674126267