Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq1512 168 1e-39 seq1443 143 5e-32 seq3416 141 2e-31 seq1434 89.7 1e-15 seq35 89.7 1e-15 >seq1512 Length=221874 Score = 168 bits (186), Expect = 1e-39 Identities = 177/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 15285 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 15226 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 15225 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 15167 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||| | | |||| | ||| |||||||||||||||||| |||| ||||||| | | Sbjct 15166 GCTTGACTTCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACTG 15107 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| | ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 15106 TGCCTAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 15057 >seq1443 Length=413265 Score = 143 bits (158), Expect = 5e-32 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 389610 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 389551 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 | ||||| | |||| | ||| ||| | || || |||||| || ||||| | Sbjct 389550 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTGGGCCTCGAGCGCAAAGACAGAAGGGAG 389491 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 |||||||| | |||| | ||| |||||||| ||||||||| |||| ||||||| | | Sbjct 389490 ATTGACTGCAAGACCCACCCGTCGAGCAGGGATGAAAGTCGGCCTTAGTGATCCGATGAT 389431 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | ||||| || |||||||| || |||||||| || || |||||| Sbjct 389430 GCCAAGTGGAAGGGACGTCGCTCAACAGATAAAAGTGACTCTAGGGATA 389382 >seq3416 Length=231096 Score = 141 bits (156), Expect = 2e-31 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 29595 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 29654 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 29655 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 29713 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | || |||||||| ||||||||| |||| ||||| | || Sbjct 29714 GCTTGACTGCAAGACCCACCCATCGAGCAGGGATGAAAGTCGGCCTTAGTGATCTGACGA 29773 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| | ||||| || ||||| || | ||| ||||| ||| || |||||| Sbjct 29774 TGCCAAGTGGAAGGGTCGTCGTTCAATGGACAAAAGTTACTCTAGGGATA 29823 >seq1434 Length=474730 Score = 89.7 bits (98), Expect = 1e-15 Identities = 147/211 (70%), Gaps = 6/211 (3%) Strand=Plus/Minus Query 130 AGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCA-G 188 ||||| ||||||||| |||||| ||||||||||||||| | | ||| || |||| | Sbjct 360944 AGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGGTGTGCGAAGGTAGGCTCAAG 360885 Query 189 CTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTC 248 || ||| | || || | || || | ||| || |||||| || ||| Sbjct 360884 CTAAGATTCTGCTCGTGAGC-----GTAATGGTATAAGCCTGCCTGACTGTGAGACCGAT 360830 Query 249 AAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGT 308 ||| | || |||||||||||| | || |||||||| || | | ||||| ||| | Sbjct 360829 TGGTCGAACAAAGACGAAAGTCGGCCATAGTGATCCGGGAGTCCCGTGTGGAAGGGCTTT 360770 Query 309 CGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| |||||| |||| ||| | ||||||| Sbjct 360769 CGCTCAACGGATCAAAGGTACGCCGGGGATA 360739 >seq35 Length=932640 Score = 89.7 bits (98), Expect = 1e-15 Identities = 92/119 (77%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 ||||||||||| ||||| |||||||| | | || | | ||| ||||||||| ||||| Sbjct 723825 AGTGCAAAGGCTGAAGGGAGTTTGACTACAAAACTC-CGTGTCAAGCAGGGACAAAAGTT 723883 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTAC 329 || ||||||||||| | || || ||||| ||||| |||| || |||||||| ||| Sbjct 723884 GGCCTTAATGATCCAATGATGTCGACTGGAAGAGCCGTTGCTCAACAGATAAAAGTTAC 723942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982239800032