Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq3416 102 9e-20 seq1443 98.7 1e-18 seq1512 95.1 1e-17 >seq3416 Length=231096 Score = 102 bits (112), Expect = 9e-20 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 46 GGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTT-GAGACAGNNNN 104 |||| || |||||||||| || | | ||||||| |||| | | | ||||||| Sbjct 29414 GGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGC-CTCTCTCCGAGACAGTGCC 29356 Query 105 NNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTA 164 ||| || ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 29355 CAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTA 29296 Query 165 GGACCGTTA 173 ||||||||| Sbjct 29295 GGACCGTTA 29287 >seq1443 Length=413265 Score = 98.7 bits (108), Expect = 1e-18 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 397298 GGGTCTTTCTGTCCAGGTGCAGGTACTCCGCATCTTCACAGACATGTCTATTTCACCGAG 397357 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | || ||||||| ||| || || |||| |||| ||||||||||| Sbjct 397358 C-CTCTCTTCGAGACAGTGCCCAGATCGTTACGCCTTTAGTGCGGGTCAGAACTTACCCG 397416 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 | |||||||||||||||||||||||||||| Sbjct 397417 ATAAGGAATTTCGCTACCTTAGGACCGTTA 397446 >seq1512 Length=221874 Score = 95.1 bits (104), Expect = 1e-17 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | |||| || |||||||||| || | | ||||||| ||| Sbjct 15445 GGGTCTTTCTGTCCAGGTACAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 15504 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 15505 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 15563 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||| ||||| |||||||||||||||||| Sbjct 15564 ACAAGAAATTTAGCTACCTTAGGACCGTTA 15593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547113556593