Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1285 230 5e-58 seq59 163 6e-38 seq1410 143 6e-32 seq156 111 3e-22 seq2264 75.2 2e-11 seq402 73.4 8e-11 seq328 73.4 8e-11 >seq1285 Length=268354 Score = 230 bits (254), Expect = 5e-58 Identities = 258/337 (77%), Gaps = 21/337 (6%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || |||| ||| || |||||| | | |||||||||||| || |||||||||||||||| Sbjct 256629 TTCACAACCCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCATCAGGCTTTCGCCCA 256572 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||| ||||||||||| ||||||||||| |||||||||||| ||||| Sbjct 256571 TTGCAGAAAATTCCCCATTGCTGCCTCCCATAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 256512 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| |||||| Sbjct 256511 GTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCAC 256452 Query 182 CAACTAGCTAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||||||||||| ||| | || | | || || ||| || ||| ||| Sbjct 256451 CAACTAGCTAATCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTT 256405 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA- 299 | | | | | | || | ||||||||| |||||||| ||| | ||| || ||| Sbjct 256404 TTGCTCCTCAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAA 256348 Query 300 -GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||||| ||| || || ||||||||||||||||| || Sbjct 256347 GGGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACT 256311 >seq59 Length=835084 Score = 163 bits (180), Expect = 6e-38 Identities = 165/211 (78%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||| | |||| ||||||| |||| || Sbjct 28832 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGTGATATTG-CTGGATCGACCTTTTGC 28775 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| ||||||||||||| ||| || | |||||||| |||||||||||| Sbjct 28774 CCATTGTCCAAAATTCCCCACTGCTCCCTTCCATGGGAGTCTGTGCCGTGTCTCAGTCAT 28715 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| ||||||||| ||||||| || | ||| | | ||||||||| | |||| | Sbjct 28714 AGTGTGGCTGATCATCTGAAAAGACCAGCTAAGCATCATTGGCTTGGTGAGACTTTACGT 28655 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATC 209 |||||||| ||||| | || |||||||||| Sbjct 28654 GACCAACTACCTAATACTACGTAGGCTCATC 28624 >seq1410 Length=511304 Score = 143 bits (158), Expect = 6e-32 Identities = 102/117 (87%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 ||||||||| | |||||| || |||||| ||||||||||||||||||||||||| ||| Sbjct 480241 TCAGGCTTTTGGCCATTGCGGAAAATTCCCAACTGCTGCCTCCCGTAGGAGTCTGGGCCG 480300 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTT 163 ||||||||| |||||||| |||||||||||||| ||| || ||| |||| ||||||| Sbjct 480301 TGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACAAGCTACTGATCATCGCCTT 480357 >seq156 Length=790707 Score = 111 bits (122), Expect = 3e-22 Identities = 82/96 (85%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 |||||||||| |||||| || ||||| ||| |||||||||||||||||||||| || Sbjct 597398 TCAGGCTTTCTCCCATTACGGAAAATTCCTCACCGCTGCCTCCCGTAGGAGTCTGGGCCA 597339 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGA 142 ||||||||| |||||||| || ||||||||||| || Sbjct 597338 TGTCTCAGTCCCAGTGTGGCTAATCATCCTCTCGGA 597303 >seq2264 Length=404457 Score = 75.2 bits (82), Expect = 2e-11 Identities = 102/138 (74%), Gaps = 11/138 (8%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| || | | |||| || |||| | |||||| Sbjct 43613 CTTTACAAGCGGTATTGCCCTTCTT-CACTCAAGTAGTATTG-CTCGATCGGACTTTCGT 43670 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCT------C 112 ||||||||||| ||| || |||| ||||||| || | |||| ||||||| | Sbjct 43671 CCATTGTCCAAGATTTTTCATTGCT-AATCCCGTAAGAATTTGGATCGTGTCTTAATCCC 43729 Query 113 AGTTCCAGTGTGACTGAT 130 ||| |||||||||||||| Sbjct 43730 AGTCCCAGTGTGACTGAT 43747 >seq402 Length=581868 Score = 73.4 bits (80), Expect = 8e-11 Identities = 57/68 (84%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 127 TGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACT 186 |||||| |||||| |||||||||| ||| | || ||||| ||| ||| ||||||||||| Sbjct 364662 TGATCAACCTCTCGGACCAGTTACTAATCATTGCTTTGGTAAGCTATTGCCTCACCAACT 364603 Query 187 AGCTAATC 194 | |||||| Sbjct 364602 AACTAATC 364595 >seq328 Length=1310980 Score = 73.4 bits (80), Expect = 8e-11 Identities = 110/154 (71%), Gaps = 13/154 (8%) Strand=Plus/Minus Query 19 TTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCA 78 |||| || | ||| ||||||| ||| ||||||||||||||||| | || |||| ||| Sbjct 1182148 TTCTATCTC-CACCCGGCATTCTCTG--TCAGGCTTTCGCCCATTATGGAAAATTCTCCA 1182092 Query 79 CTG--CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 ||| | ||||| ||||||||||| ||||| | |||| || ||||||| Sbjct 1182091 CTGTTATACCTCCTTTAGGAGTCTGGGTCGTGTAT--------GTGTATTTGGTCATCCT 1182040 Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGC 170 || | ||| ||| ||| |||||||| | ||| Sbjct 1182039 TTCGGGCCAACTACTTATCATCGCCTTGATAAGC 1182006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071825188960