Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1512 244 4e-62 seq1443 228 3e-57 seq559 84.2 8e-14 seq136 77.0 1e-11 >seq1512 Length=221874 Score = 244 bits (270), Expect = 4e-62 Identities = 316/429 (74%), Gaps = 27/429 (6%) Strand=Plus/Plus Query 139 TGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCC 198 ||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||||| Sbjct 16679 TGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACCC 16738 Query 199 CTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCT 258 ||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || | Sbjct 16739 CTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTTT 16798 Query 259 TACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTGCC 316 |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| | Sbjct 16799 CACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGAC 16858 Query 317 ACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAACC 372 | | ||||||| |||||||||||||||||||| || || |||||| Sbjct 16859 AAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAACC 16911 Query 373 TCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTAC 431 || ||| | | | |||| |||||||||||||| |||||||| |||| | | Sbjct 16912 AAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GAGAT 16966 Query 432 CTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTC 491 || || || |||| || | ||| || | ||||||| || ||||||||||| Sbjct 16967 CT----GG----TCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTC 17018 Query 492 CCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGG 551 |||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| ||| Sbjct 17019 CCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGG 17078 Query 552 AGTATTTAG 560 ||||||||| Sbjct 17079 AGTATTTAG 17087 >seq1443 Length=413265 Score = 228 bits (252), Expect = 3e-57 Identities = 336/469 (72%), Gaps = 25/469 (5%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 398530 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTAGAGTGGCATTTCAC 398589 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | || ||| | ||| ||||||| ||||||| || Sbjct 398590 CCCTAACCACAACTCATCCACTAATTCTTAAACATCAGTCGGTTCGGACCTCCACTTAGT 398649 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| ||||||||||||| | ||||||| | | | | ||| Sbjct 398650 TTCACCCAAGCTTCATCCTGGTAATGGATAGATCACCCAGATTCGGGTCCATAAGCAGTG 398709 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTC 374 || | ||||||| |||||||||||||||||||| | ||||| | || Sbjct 398710 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT----CCGGTGGGTTCCCTTC 398761 Query 375 GCGACACAAC-GC---AAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTA 430 | | | || || | |||| | ||||||||| || |||||||| ||| | | Sbjct 398762 ACCAAGCCACTGCCTATGAGTCGCCGACTCATTCTTTAACAGGCACGCGATCA---GAGA 398818 Query 431 CCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACT 490 || || || ||| || | ||| || | |||||| || |||||||||| Sbjct 398819 TCT----GG----TCTCCTCACACTGCTTGGGAGCTTACAGTTTCATGTTCTATTTCACT 398870 Query 491 CCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAG 550 ||||| ||||| ||||||||| ||||||||||||||| | ||||||||||||| || Sbjct 398871 CCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTTGCTATCGGTCACCCAG 398930 Query 551 GAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 398931 GAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 398979 >seq559 Length=401791 Score = 84.2 bits (92), Expect = 8e-14 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 474 TCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTC 533 ||| || ||||||||||||||| ||||| ||||||||| ||||||||||||||| | Sbjct 319593 TCATGTTCTATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTT 319652 Query 534 CGCTATCGGTCACCAAGGAGT 554 || ||| ||||||| || ||| Sbjct 319653 CGTTATTGGTCACCCAGAAGT 319673 >seq136 Length=986973 Score = 77.0 bits (84), Expect = 1e-11 Identities = 82/107 (77%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||||||| || |||||| | ||||||||||||| | | ||| || |||| |||||| Sbjct 679330 GCTGCACCTCAA-GCATTTAGAGGAGAACCAGCTAGCTCTGCGTTCGAGTGGCATTTCAC 679272 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGG 243 ||||| || || |||||| || | | ||| || | ||| |||| || Sbjct 679271 CCCTAACCCCAACTCATCCGCTGATTCTTCGACATCAGTCGGTTTGG 679225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817303603968