Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq1512 205 2e-50 seq1443 190 5e-46 seq559 77.0 8e-12 >seq1512 Length=221874 Score = 205 bits (226), Expect = 2e-50 Identities = 271/359 (75%), Gaps = 14/359 (4%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 16743 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 16799 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 16800 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 16855 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 16856 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 16913 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | | || Sbjct 16914 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCTG-GT 16971 Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306 ||||||||||||| || |||||||||| | ||||||||||||||| | ||||| Sbjct 16972 CTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGT 17030 Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 ||||||| || |||||||||||||||| ||| |||||||||| ||| ||||||||||| Sbjct 17031 TCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCC 17089 >seq1443 Length=413265 Score = 190 bits (210), Expect = 5e-46 Identities = 301/415 (73%), Gaps = 20/415 (5%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| || |||| || || ||| ||||||||||| |||||| ||||| | Sbjct 398596 CCACAACTCAT-CCACTAA-TTCTTAAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 398652 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| || ||||||||| ||| | || |||||| || | || Sbjct 398653 ACCCAAGCTT-CATCCTGGTAAT-GGATAGATCACCCAGATT-CGGGTCCATAAGC-AGT 398708 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| || | | Sbjct 398709 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTCACCAA 398766 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| ||| |||| | || ||| |||| ||| | | | Sbjct 398767 -GCCACTGCCTATGAGTCGCCGACTCATTCTTTAACAGGCACGCGATCAGAGATC----T 398821 Query 247 GGGCTCC---CACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 || |||| ||||||||| || ||| |||||| | ||||||||||||||| | || Sbjct 398822 GGTCTCCTCACACTGCTTGGGAGCTTACAGTTTCATGTTCTATTTCACTCCCCGATG-GG 398880 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 |||||||||| || |||||||||||||||| || |||||||||| ||| ||||||||| Sbjct 398881 GGTTCTTTTCACCCTTCCCTCACGGTACTACTTTGCTATCGGTCACCCAGGAGTATTTAG 398940 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 ||||| | | |||||| | ||||| || || | ||||| || | ||||| Sbjct 398941 CCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACT 398995 >seq559 Length=401791 Score = 77.0 bits (84), Expect = 8e-12 Identities = 67/82 (82%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 276 TCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGT 335 ||| | ||||||||||||||| | |||||||||||| || |||||||||||||||| | Sbjct 319593 TCATGTTCTATTTCACTCCCCGATG-GGGGTTCTTTTCACCCTTCCCTCACGGTACTACT 319651 Query 336 TCACTATCGGTCAGTCAGTAGT 357 || ||| ||||| ||| ||| Sbjct 319652 TCGTTATTGGTCACCCAGAAGT 319673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241397532288