Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq1285 210 4e-52 seq1410 122 2e-25 seq156 100 6e-19 seq59 96.9 7e-18 >seq1285 Length=268354 Score = 210 bits (232), Expect = 4e-52 Identities = 231/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| ||||||| |||| ||||||| || || ||||| ||||||||||| ||| Sbjct 256598 GGCATTGCTCCATCAGGCTTTCGCCCATTGCAGAAAATTCCCCATTGCTGCCTCCCATAG 256539 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 256538 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 256479 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || | Sbjct 256478 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 256419 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 256418 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 256375 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 256374 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 256316 Query 300 CCACT 304 ||||| Sbjct 256315 CCACT 256311 >seq1410 Length=511304 Score = 122 bits (134), Expect = 2e-25 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| ||| |||||| | || || ||| ||||||||||||||||||||||||||||| Sbjct 480241 TCAGGCTTTTGGCCATTGCGGAAAATTCCCAACTGCTGCCTCCCGTAGGAGTCTGGGCCG 480300 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTT 129 ||||||||||||| |||||| | ||| |||||| | | ||||| |||| ||| ||| Sbjct 480301 TGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACAAGCTACTGATCATCGCCTT 480357 >seq156 Length=790707 Score = 100 bits (110), Expect = 6e-19 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| |||||| | || || || ||| ||||||||||||||||||||||||| Sbjct 597398 TCAGGCTTTCTCCCATTACGGAAAATTCCTCACCGCTGCCTCCCGTAGGAGTCTGGGCCA 597339 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTC 105 ||||||||||||| |||||| ||| |||||| Sbjct 597338 TGTCTCAGTCCCAGTGTGGCTAATCATCCTCTC 597306 >seq59 Length=835084 Score = 96.9 bits (106), Expect = 7e-18 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24 CCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCC 83 |||||||| ||| || |||||||||| ||| || | |||||||| |||||||||||||| Sbjct 28775 CCCATTGTCCAAAATTCCCCACTGCTCCCTTCCATGGGAGTCTGTGCCGTGTCTCAGTCA 28716 Query 84 CAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATC 143 | |||||| | ||| | || || |||| ||| | ||||||||| | ||| Sbjct 28715 TAGTGTGGCTGATCATCTGAAAAGACCAGCTAAGCATCATTGGCTTGGTGAGACTTTACG 28656 Query 144 TCACCAACTACCTAAT 159 | |||||||||||||| Sbjct 28655 TGACCAACTACCTAAT 28640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998237190912