Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq1512 190 5e-46 seq1443 183 7e-44 seq763 114 3e-23 seq234 114 3e-23 seq850 111 4e-22 >seq1512 Length=221874 Score = 190 bits (210), Expect = 5e-46 Identities = 294/409 (72%), Gaps = 18/409 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 16127 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 16186 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | || | | | |||||| |||| | || |||||| ||| Sbjct 16187 GAGGAACCCTTAGGTTTTCAGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 16246 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 |||||||||| ||| || |||||| | || ||| ||||| || || | Sbjct 16247 ACATTCTCACTTCCGCTTCG--TCCACCCCTGC-TCGAGCGGGTGCTTC-CCTCTAAGGA 16302 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 16303 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 16358 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| | |||| | | || | ||||||||||||||||||||||||||| Sbjct 16359 CCCCGTT-CATCTTTTGCGCAAGAGCGCTCAATCAGTGAGCTATTACGCACTCTTTCAAG 16417 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | || ||||||| | || |||||||||||||||| || | | || |||||| |||| Sbjct 16418 GGTGACTGCTTCTAGGCAAACCTCCTGGTTGTCTCTACACCCCTACCTCCTTTATCACTA 16477 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 16478 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 16526 >seq1443 Length=413265 Score = 183 bits (202), Expect = 7e-44 Identities = 291/407 (71%), Gaps = 18/407 (4%) Strand=Plus/Plus Query 3 ACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCT 62 ||||||||| | |||| |||||| || ||||||||| | || ||| | | Sbjct 397982 ACTACGCCTTTTGGCCCTCTCTTAGGCCCTGACTCACCCTCCGTGGATGAACCTTGCAGA 398041 Query 63 GGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGC 121 ||||||||| | | || | | | |||||| |||| | || |||||| ||| | Sbjct 398042 GGAACCCTTAGGTTTTCAGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCGAC 398101 Query 122 ATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACG- 178 ||||||||| ||| || |||||| | || | ||| ||||| || || | || Sbjct 398102 ATTCTCACTTCCGCTTCG--TCCACCCCTGC-TCGCGCGGGTGCTTC-CCTCTAAGGCGG 398157 Query 179 -ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCC 233 ||||||||||||| | || ||| | |||| ||||||| ||| |||| ||| Sbjct 398158 AACGCTCCCCTACCGATGCATTTTTACA---TCCCACTGCTTCGGTAGATCGCTTA-GCC 398213 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 ||| | ||| ||||||| | | || || || ||||||||||| ||||||||||||| Sbjct 398214 CCGTT-CATCTTCGGCGCAATAGCGCTCGATCAATGAGCTATTACCCACTCTTTCAAGGG 398272 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 |||||||||| | || |||||||||| | ||| ||| | | || |||||| ||||||| Sbjct 398273 TGGCTGCTTCTAGGCAAACCTCCTGGCTATCTCTGCACCCCTACCTCCTTTATCACTGAG 398332 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || |||||||||||||||| ||||||||| ||||||||||||| Sbjct 398333 CGGTCATTTAGGGGCCTTAGCTGGTGATCTGGGTTGTTTCCCTCTCG 398379 >seq763 Length=436862 Score = 114 bits (126), Expect = 3e-23 Identities = 274/405 (68%), Gaps = 37/405 (9%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 109552 CGACTACGCCTTTCGGCCTAATCTTAGGTCCTGACTCACCCTTCGTGGACGAACCTTATG 109611 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACAC-GCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | | |||||| ||| Sbjct 109612 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGTGTTACTCAAGCCG 109671 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 |||||||||| ||| || |||||| | || | || ||||| | || | | Sbjct 109672 ACATTCTCACTTCCGCTTCG--TCCACCCCTGC-TCGCGCGTGTGCTTCTCT-CTAAGGC 109727 Query 178 G--ACGCTCCCCTACCCAACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCC 235 | ||||||||||||| | || | || ||||||||| || ||| ||||| ||||| Sbjct 109728 GGAACGCTCCCCTACCGATGCATTTACGTC-CCACAGCTTTGGTAGATCACTTA-GCCCC 109785 Query 236 GCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATG 295 | | ||| ||||||| || |||| |||||||||||||| || Sbjct 109786 GTT-CATCTTCGGCGC--AA-------------GAGC------GCACTCTTTCAAGGGTG 109823 Query 296 GCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTC 355 | |||||| | || |||| ||| ||| ||| | | || |||||| || |||| Sbjct 109824 GTTGCTTCTAGGCAAACCAACTG----TCTCTGCACCCCTACCTCCTTTATCATTGAGCG 109879 Query 356 ACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || |||||||||||| ||| |||| ||||||||||||||||| Sbjct 109880 GTCATTTAGGGGCCTTATCTGGTGATTCGGGCTGTTTCCCTCTCG 109924 >seq234 Length=2100844 Score = 114 bits (126), Expect = 3e-23 Identities = 144/194 (74%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||| ||| ||| |||| |||||| | ||| |||||| | || || || Sbjct 547436 CCACAGCTTTGGCAGATCGCTTA-GCCCCGTT-CATCTTCGGCGTAAGAGTGCTCGATCA 547493 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 ||| |||||||| ||||||||||||| |||||||||| | || ||||| ||| ||||| Sbjct 547494 GTGTGCTATTACACACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCT-CTGACTGTCTT 547552 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | || | |||| |||| || || ||||||||||| | ||||| ||| Sbjct 547553 TGCACCCTTACCTACTTTATCACTAAGCGGTCATTTAGGGGCCTTTATTAGTGATCCGGG 547612 Query 387 CTGTTTCCCTCTCG 400 |||||||| ||||| Sbjct 547613 CTGTTTCCTTCTCG 547626 >seq850 Length=639856 Score = 111 bits (122), Expect = 4e-22 Identities = 101/125 (81%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||||||| ||| |||| |||||| | ||| || |||| | || || || Sbjct 51511 CCACAGCTTCGGCAGATCGCTTA-GCCCCGTT-CATCTTCAGCGCAAGAGTGCTCGATCA 51568 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||||||||||||||||||||||||| |||||||||| | || |||||||||| ||||| Sbjct 51569 GTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTC 51628 Query 327 CGCAA 331 |||| Sbjct 51629 TGCAA 51633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177407968768