Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq678 134 1e-29 seq328 122 9e-26 seq5529 116 4e-24 seq1835 107 2e-21 >seq678 Length=338508 Score = 134 bits (148), Expect = 1e-29 Identities = 139/178 (78%), Gaps = 3/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||||| Sbjct 67677 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAACATGGG 67736 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | |||| ||||| ||| || | ||| || |||||||| | Sbjct 67737 ATAACATCATAGGAT-TCCGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGATTA 67794 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||| ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 67795 ATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 67852 >seq328 Length=1310980 Score = 122 bits (134), Expect = 9e-26 Identities = 136/178 (76%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 ||| |||||| ||||||||| | || ||||| |||| |||| | |||||||| ||||| Sbjct 1076231 TTATTTTGAAGAAATTAGAGTGCTCGAAGCAAGCCTATGCTTTGGATACATTAGCATGGG 1076172 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | |||| ||||| ||| || | || | || ||||||| | Sbjct 1076171 ATAACATCATAGGAT-TCCGGTCCTATTCTGTTGGCATTCAGAATCGGAA-TAATGATTA 1076114 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||| ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 1076113 ATAGGGACAGTCGGGGGCATTTGTATTTCATAGTCATAGGTGAAATTCTTGGATTTAT 1076056 >seq5529 Length=76990 Score = 116 bits (128), Expect = 4e-24 Identities = 135/178 (76%), Gaps = 3/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| |||| ||| | |||||||| ||||| Sbjct 23700 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTTTGGATACATTAGCATGGG 23759 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | | || ||||| ||| || | || | ||||||| | Sbjct 23760 ATAACATCATAGGAT-TCCAGTCCTATTCTGTTGGCCTTCGTGATCAAAA-TAATGATTA 23817 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||| ||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 23818 ATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAAAGGTGAAATTCTTGGATTTAT 23875 >seq1835 Length=198957 Score = 107 bits (118), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 37 TCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGAATAATAGAATAGGACGTGCGGTT 95 |||||||| |||| |||| | |||||||| ||||| |||| | |||||| | |||| Sbjct 52024 TCAAAGCAAGCCTACGCTCTGGATACATTAGCATGGGATAACATCATAGGAT-TCCGGTC 52082 Query 96 CTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAG 155 ||||| ||| || | ||| || |||||||| |||| ||| ||||||||| | | Sbjct 52083 CTATTCTGTTGGCCTTCGGGATCGGA-GTAATGATTAATAGGGACAGTCGGGGGCATTCG 52141 Query 156 TATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 |||| || |||| ||||||||||||||||||||| Sbjct 52142 TATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 52176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511919117280