Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq1512 264 2e-68 seq1443 223 5e-56 seq3416 203 5e-50 seq1434 176 7e-42 seq959 95.1 2e-17 seq2230 86.0 1e-14 seq590 75.2 2e-11 >seq1512 Length=221874 Score = 264 bits (292), Expect = 2e-68 Identities = 223/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 14734 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 14793 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 14794 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 14853 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 14854 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 14913 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||| ||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 14914 ACGTTCTGAACCTAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 14973 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 14974 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 15006 >seq1443 Length=413265 Score = 223 bits (246), Expect = 5e-56 Identities = 214/273 (78%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| || |||| ||| |||||| Sbjct 389059 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCAGCACTTGGCTACCCAGCG 389118 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 389119 TTTACCATGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 389178 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | || || ||||||||| || | |||||| | |||| |||| |||||||||| || Sbjct 389179 AGAGAAAGATCCTCTCAATGCTCTAATGCCCACACCAGATATGGACTGAACTGTCTCACG 389238 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 || ||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 389239 ACATTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 389298 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| || ||||||| | || ||| |||| || Sbjct 389299 ACTACAACCCCAGGTGGCGAAGAGTTGACAACG 389331 >seq3416 Length=231096 Score = 203 bits (224), Expect = 5e-50 Identities = 156/185 (84%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 72 GGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGC 131 |||| | ||| ||| |||||||||| |||| |||||||||||| |||||| ||| || Sbjct 30077 GGCACGATAACCGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTTGTACTAGGGAAAGG 30018 Query 132 TCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGA 191 ||||||||| || |||||||| |||||| ||||||||||||||| ||||||||||| Sbjct 30017 TCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGA 29958 Query 192 ACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCC 251 ||||||||| ||| || |||||||||| |||||||| ||||||||| || |||| ||||| Sbjct 29957 ACCCAGCTCACGTACCACTTTAATGGGTGAACAGCCAAACCCTTGGAACATACTACAGCC 29898 Query 252 CCAGG 256 ||||| Sbjct 29897 CCAGG 29893 >seq1434 Length=474730 Score = 176 bits (194), Expect = 7e-42 Identities = 179/233 (77%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 47 AACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATC 106 ||||||||| || || ||| |||||| ||||| || ||||| ||||| | ||| | Sbjct 360456 AACTTAGCTGCCTGGCATTGCTATTGGCATAACAACCAGTACACCATAGGTTGGCCCAAC 360515 Query 107 CCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT----ACGCCCACGACGGAT 162 || |||||||||||||| | |||||| || | ||| || || | | ||| Sbjct 360516 CCAGTCCTCTCGTACTAGTGTTGGCTCCTTGCAGTTCTCCCTTTAACACCAAAGGTAGAT 360575 Query 163 AGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAA 222 ||| ||||||||||||| ||||||||| |||||| ||| ||| || ||| ||| |||||| Sbjct 360576 AGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTGAATCGGCGAA 360635 Query 223 CAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || || |||||||||||||| ||||| |||||||||| || ||| |||||||| Sbjct 360636 CAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCG 360688 >seq959 Length=308885 Score = 95.1 bits (104), Expect = 2e-17 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 ||||| ||||||||| ||| |||||||| |||||| ||| ||| || ||| ||| || Sbjct 37827 GATAGAAACCGAACTGCCTCATGACGTTCTAAACCCAACTCACGTACCACTTGAATTAGC 37886 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGG 256 ||||| || |||||||||||||| ||||| ||| ||| Sbjct 37887 GAACAACCGAACCCTTGGGACCTTCTTCAACCCTAGG 37923 >seq2230 Length=183876 Score = 86.0 bits (94), Expect = 1e-14 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 157 ACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATG 216 || |||| | |||||||| |||| |||||| | ||| || ||| ||| | ||| ||| Sbjct 162837 ACAGATATGAACCGAACTATCTCAAGACGTTTTAAACTCAACTCACGTATCACTTAAATC 162896 Query 217 GGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGAC 271 || ||||| | |||||||||||||| | ||| ||||| |||| || ||| |||| Sbjct 162897 GGTGAACAATCGAACCCTTGGGACCTTCATCAACCCCATGATGTGATGAGTCGAC 162951 >seq590 Length=504557 Score = 75.2 bits (82), Expect = 2e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 80 AACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCA 139 ||||||| ||||||||| ||||| |||||||||||| |||||| ||| || |||||||| Sbjct 312286 AACTGGTATACCAGAGGTGTGTCCTTCCCGGTCCTCTTGTACTAGGGAAAGATCCTCTCA 312227 Query 140 A 140 | Sbjct 312226 A 312226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780676653852