Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1285 266 8e-69 seq1410 141 2e-31 seq59 127 5e-27 seq156 111 4e-22 seq352 86.0 2e-14 >seq1285 Length=268354 Score = 266 bits (294), Expect = 8e-69 Identities = 306/410 (75%), Gaps = 30/410 (7%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || |||||||| ||||||||| | | |||||||||| ||| |||||||||| |||||||| Sbjct 256629 TTCACAACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCATCAGGCTTTCGCCCATT 256570 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | || |||||||| ||||||||||| ||||||||||| |||||||||||| ||||||| Sbjct 256569 GCAGAAAATTCCCCATTGCTGCCTCCCATAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 256510 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 256509 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 256450 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| || | || ||| ||| |||| Sbjct 256449 ACTAGCTAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 256401 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||| ||| | ||||||| |||| Sbjct 256400 TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 256343 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||||||||||| ||| || || |||| Sbjct 256342 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 256297 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| ||||||||||||||||||| ||||||| ||||||| ||||| Sbjct 256296 ---CCGTCCGACTTGCATGTGTTAGGCATGCCGCCCGCGTTCATCCTGAG 256250 >seq1410 Length=511304 Score = 141 bits (156), Expect = 2e-31 Identities = 101/116 (87%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 48 TCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 107 |||||||| | |||||| | || |||||| ||||||||||||||||||||||||| ||| Sbjct 480241 TCAGGCTTTTGGCCATTGCGGAAAATTCCCAACTGCTGCCTCCCGTAGGAGTCTGGGCCG 480300 Query 108 TGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 ||||||||| |||||||||||| |||||||||| ||| ||||| |||| |||||| Sbjct 480301 TGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACAAGCTACTGATCATCGCCT 480356 >seq59 Length=835084 Score = 127 bits (140), Expect = 5e-27 Identities = 154/209 (74%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||| | || |||| ||| ||| |||| Sbjct 28832 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGTGATATTGCTGGATCGACCTTTTGCCC 28773 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| ||||||||||||| ||| || | |||||||| |||||||||||| || Sbjct 28772 ATTGTCCAAAATTCCCCACTGCTCCCTTCCATGGGAGTCTGTGCCGTGTCTCAGTCATAG 28713 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| ||||| |||||||||| | ||| | | || |||| | | |||| Sbjct 28712 TGTGGCTGATCATCTGAAAAGACCAGCTAAGCATCATTGGCTTGGTGAGACTTTACGTGA 28653 Query 182 CCAACTAGCTAATCCCATCTGGGTTCATC 210 ||||||| ||||| | | | || ||||| Sbjct 28652 CCAACTACCTAATACTACGTAGGCTCATC 28624 >seq156 Length=790707 Score = 111 bits (122), Expect = 4e-22 Identities = 82/96 (85%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 48 TCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 107 |||||||| | |||||| | || ||||| ||| |||||||||||||||||||||| || Sbjct 597398 TCAGGCTTTCTCCCATTACGGAAAATTCCTCACCGCTGCCTCCCGTAGGAGTCTGGGCCA 597339 Query 108 TGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGA 143 ||||||||| ||||||||||| |||||||||| || Sbjct 597338 TGTCTCAGTCCCAGTGTGGCTAATCATCCTCTCGGA 597303 >seq352 Length=581315 Score = 86.0 bits (94), Expect = 2e-14 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || |||| ||||||||| | | || ||||||| ||| | |||| || |||| || Sbjct 76629 TTCACGACCCATAGGCCTTCTGCCTCCAAGCGGCATTGCTTCGCCAGGATTTCGCCATTT 76570 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 101 | | || |||||||||| ||||||||||||||||||| Sbjct 76569 GCGAAAAATTCCCCACTACTGCCTCCCGTAGGAGTCT 76533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222200663232